Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1419 210 3e-48
seq1484 183 4e-40
seq1828 147 3e-29
seq2328 118 1e-20
seq2640 113 6e-19
seq2377 105 8e-17
>seq1419
Length=271755
Score = 210 bits (232), Expect = 3e-48
Identities = 281/391 (72%), Gaps = 6/391 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| |
Sbjct 3653 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 3712
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||||||||||||||||| || || |||| ||||| || |||||| || | |
Sbjct 3713 CTCACCGAGGCCGACATCCAGCCCCAACTGAATCGCCGCCGTCCCGGCCAGAGCTCCATC 3772
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| || ||||| ||||| ||||| ||| |||| ||| || || || |||| ||
Sbjct 3773 ACGACCCCGCGAAACGAAAAGGATCGTGTCGTCATTCAGAGCGGTACCGAATTCGGCGTC 3832
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337
|| |||||| | || ||||| | | || ||| |||||||| ||| ||||
Sbjct 3833 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAACGAGGACCAGCGTCCCAAGGACTAC 3892
Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| ||| |||| || | | || || || || |||||||| | |||||| | |
Sbjct 3893 GGCAACTCCACCATGGACATGTTCCCCCGTCCTTCCCACGCCGATTGGACCTACCTCGAG 3952
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||| ||||||||||| || || ||||| ||||| || || |||||||||||| ||
Sbjct 3953 AAGTATGGCATCAAGGCCTCCTCAGGCGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 4012
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484
||||| |||||||| || ||||||||||||
Sbjct 4013 CGCGTTGCCGCCGGTGCCCTCGCCGAGAAAT 4043
Score = 129 bits (142), Expect = 7e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
||||||||||| |||||||| || || ||||| ||||||| || | | |||||||
Sbjct 4274 GAGGACAGCATTGGCGGCACTGTCACCTGCGTCATTCGCAACCCCCCCTCCGCCCTCGGC 4333
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| |||
Sbjct 4334 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCCCATGCCATGCTCAGCATCCCCGCC 4393
Query 19164 ACCAAGGGATTCGAGATTGGC 19184
|||||||| ||||| || |||
Sbjct 4394 ACCAAGGGCTTCGAAATCGGC 4414
>seq1484
Length=366709
Score = 183 bits (202), Expect = 4e-40
Identities = 333/489 (68%), Gaps = 15/489 (3%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| ||||| ||||||||||| |||| ||||| ||
Sbjct 274417 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGA 274476
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | |||| ||||| ||| || | || || | ||
Sbjct 274477 GGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACC 274536
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| |||||| ||||||||| | ||||| ||||| ||||||||||| |||||
Sbjct 274537 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTC 274596
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || | || | || ||
Sbjct 274597 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 274656
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||||| ||||| | || |||||| || | | |||||| || ||||||
Sbjct 274657 AGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 274716
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||||| || || || || | ||||||
Sbjct 274717 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCGAC 274761
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| | |||| | | |||| | |||| ||||| ||
Sbjct 274762 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGA 274821
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || |||| ||| ||| || || || || |||||||| | | ||||||
Sbjct 274822 TCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 274881
Query 1630545 GGCGTCGAG 1630553
| ||| ||
Sbjct 274882 AGAGTCAAG 274890
Score = 100 bits (110), Expect = 3e-15
Identities = 319/501 (64%), Gaps = 2/501 (0%)
Strand=Plus/Plus
Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160
||||| |||||| ||| | || |||||||| ||| || || |||| |
Sbjct 273917 ACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAG 273976
Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTT 1628219
||| || |||||| ||||| ||||||| | | | | || || ||||||| ||||||
Sbjct 273977 TACTCGATGATCTCCGTGCAGAGGTTGGA-GCTGCGGATGGTGCCAAGGTTCTTCTGGTT 274035
Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279
| | | ||||| |||| ||||||| ||||||| | || ||| |||||| |||| ||
Sbjct 274036 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGC 274095
Query 1628280 CGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNN 1628339
| ||| |||||| |||||| || | || || | | || | ||||
Sbjct 274096 CTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTG 274155
Query 1628340 NNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGC 1628399
|| || || |||||||||| ||| |||||| ||
Sbjct 274156 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 274215
Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459
|||| || || | ||| | |||||| || || | | | ||| ||||||||
Sbjct 274216 CTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTC 274275
Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519
|||| || ||| || ||||| || || || |||||||||||||||||||||
Sbjct 274276 GGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTT 274335
Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579
|| || | |||||| | ||||||||||| ||||| |||||| ||| || ||
Sbjct 274336 GCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGC 274395
Query 1628580 GCCCTTGCGCTTGCCGCCGCC 1628600
||| ||| ||| ||| ||
Sbjct 274396 ACCCGGGCGTTTGTTGCCACC 274416
Score = 93.3 bits (102), Expect = 5e-13
Identities = 132/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393
||||||| || || || || | || || || ||| |||||||||| |||| |
Sbjct 273363 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 273422
Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453
||| | |||| ||||||||| ||||||||| || | || || |||||| |||| |
Sbjct 273423 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 273482
Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512
|||| || |||||||| | |||||||| | || || || | || ||||||||||||
Sbjct 273483 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAAAGCGTCCCAGTCC 273541
Query 1627513 CAG 1627515
|||
Sbjct 273542 CAG 273544
>seq1828
Length=310077
Score = 147 bits (162), Expect = 3e-29
Identities = 98/109 (90%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||||||||||||||| || |||||| | || |||||| | || ||||||
Sbjct 101994 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTCGGTTGCAAGACCGTCGCCAAC 102053
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 102054 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACCTTCAACATCA 102102
>seq2328
Length=411296
Score = 118 bits (130), Expect = 1e-20
Identities = 229/327 (70%), Gaps = 17/327 (5%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| ||| || |||||||||||||| | || |||||
Sbjct 56851 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATG 56910
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | |||||| |||| | ||||||| ||| || || |||| ||
Sbjct 56911 TTCTCCATAAAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATTGCCAAGAGCAAC- 56969
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| || || ||||| ||||| ||||| |||||||| ||| ||| || |||||||||||
Sbjct 56970 CAAG-AGACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGA 57028
Query 868869 --TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926
|||||| | ||||| | |||| ||| ||||| | |||||||| ||| || |||||
Sbjct 57029 GCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGAC 57086
Query 868927 GATGATCTGCCT---GGGCACGTCGGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCA 868982
|| || | ||| | | | || | || | || |||| | | | |||||| |
Sbjct 57087 AATAATGT-CCTCAATGACCTGCTTGCTGGGGCGGTTCTTGAGGTG---AGAGTAGAGGA 57142
Query 868983 GGCAGGCAAAGTCGCAGTGCA-ACCCT 869008
|||||||||||||| ||| | |||||
Sbjct 57143 GGCAGGCAAAGTCGGTGTGGAGACCCT 57169
Score = 113 bits (124), Expect = 6e-19
Identities = 142/194 (73%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||| | |||||| |||| || || ||||| || || |||||
Sbjct 57165 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTT 57224
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||||| | ||| || ||| ||||| |||||||||||||| ||
Sbjct 57225 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAA 57284
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356
| | | ||| |||| ||| ||| |||| | ||| | | |||||||||||| |||
Sbjct 57285 GGCAACGAGGCGCTGGGCGAAG-----GAGGACTTCTCGTCGCTGATCCACTTCAGAGCC 57339
Query 869357 CAGTCGGCCTTTTT 869370
||||||||||| ||
Sbjct 57340 CAGTCGGCCTTCTT 57353
>seq2640
Length=74610
Score = 113 bits (124), Expect = 6e-19
Identities = 254/373 (68%), Gaps = 18/373 (5%)
Strand=Plus/Minus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||| ||||||| | |||||||| || || |||| | | | |||||||||||||||||||
Sbjct 53178 GGCAGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 53120
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||| ||||| | |||| |||||| ||||
Sbjct 53119 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCACGGTGGAGCTGGGACTCGGTGGTGC 53060
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGA 1726867
| ||||| | |||||| | | | ||| || || | |||| ||| ||
Sbjct 53059 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCAAGGAACTGCGGGG-----AGATGGT 53005
Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926
| ||| | |||| ||| | |||| || | ||||| || || ||||| || || |
Sbjct 53004 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 52948
Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986
||| || |||||| | | | | | | ||||| || |||||| ||
Sbjct 52947 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATATCCGGGTCGTTGAT 52888
Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046
||||||||||| |||||||| || || ||||| |||| ||||||||||||| |||||
Sbjct 52887 GAGGCCCTTCCAGCCGACGGTGGTACGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 52828
Query 1727047 AAGCGCGTCGCCG 1727059
|| |||||||
Sbjct 52827 GAG---GTCGCCG 52818
>seq2377
Length=307564
Score = 105 bits (116), Expect = 8e-17
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| || || |||||| |||| |||| | || |||||| | |
Sbjct 37375 TCGACGTCGTCCGTAACCGCATCAAAGGTTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 37316
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| ||||||||| | | || ||||||||||||||| || | || || | |||||||| |
Sbjct 37315 GCCGCCACAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAG 37256
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
| || || || ||||| | || |||||||||||||||| ||| | || ||||||
Sbjct 37255 CTCTCCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 37196
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCG 1574236
||| | | |||||||| | || | |||||| |||||||| || ||
Sbjct 37195 AGTCCAACAAGATCATCGAGCCGCTGC--AGTCGCGATGCGCCATCCTCCG 37147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106901540678032
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