Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1419 210 3e-48 seq1484 183 4e-40 seq1828 147 3e-29 seq2328 118 1e-20 seq2640 113 6e-19 seq2377 105 8e-17 >seq1419 Length=271755 Score = 210 bits (232), Expect = 3e-48 Identities = 281/391 (72%), Gaps = 6/391 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| |||| |||| ||||| ||||| ||||| | Sbjct 3653 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 3712 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||||||||||||||||| || || |||| ||||| || |||||| || | | Sbjct 3713 CTCACCGAGGCCGACATCCAGCCCCAACTGAATCGCCGCCGTCCCGGCCAGAGCTCCATC 3772 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | || ||||| ||||| ||||| ||| |||| ||| || || || |||| || Sbjct 3773 ACGACCCCGCGAAACGAAAAGGATCGTGTCGTCATTCAGAGCGGTACCGAATTCGGCGTC 3832 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337 || |||||| | || ||||| | | || ||| |||||||| ||| |||| Sbjct 3833 ACCCTCGGCACCCCGATCGGCATGCTCGTCCAGAACGAGGACCAGCGTCCCAAGGACTAC 3892 Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | ||| |||| || | | || || || || |||||||| | |||||| | | Sbjct 3893 GGCAACTCCACCATGGACATGTTCCCCCGTCCTTCCCACGCCGATTGGACCTACCTCGAG 3952 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||| ||||||||||| || || ||||| ||||| || || |||||||||||| || Sbjct 3953 AAGTATGGCATCAAGGCCTCCTCAGGCGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 4012 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 ||||| |||||||| || |||||||||||| Sbjct 4013 CGCGTTGCCGCCGGTGCCCTCGCCGAGAAAT 4043 Score = 129 bits (142), Expect = 7e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 ||||||||||| |||||||| || || ||||| ||||||| || | | ||||||| Sbjct 4274 GAGGACAGCATTGGCGGCACTGTCACCTGCGTCATTCGCAACCCCCCCTCCGCCCTCGGC 4333 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| ||| Sbjct 4334 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCCCATGCCATGCTCAGCATCCCCGCC 4393 Query 19164 ACCAAGGGATTCGAGATTGGC 19184 |||||||| ||||| || ||| Sbjct 4394 ACCAAGGGCTTCGAAATCGGC 4414 >seq1484 Length=366709 Score = 183 bits (202), Expect = 4e-40 Identities = 333/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| ||||||||||| |||| ||||| || Sbjct 274417 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGA 274476 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | |||| ||||| ||| || | || || | || Sbjct 274477 GGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACC 274536 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| |||||| ||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct 274537 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTC 274596 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || | || | || || Sbjct 274597 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 274656 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| || | | |||||| || |||||| Sbjct 274657 AGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 274716 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||||| || || || || | |||||| Sbjct 274717 TTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCGAC 274761 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| | |||| | | |||| | |||| ||||| || Sbjct 274762 ACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGA 274821 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || |||| ||| ||| || || || || |||||||| | | |||||| Sbjct 274822 TCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 274881 Query 1630545 GGCGTCGAG 1630553 | ||| || Sbjct 274882 AGAGTCAAG 274890 Score = 100 bits (110), Expect = 3e-15 Identities = 319/501 (64%), Gaps = 2/501 (0%) Strand=Plus/Plus Query 1628101 ACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGAA 1628160 ||||| |||||| ||| | || |||||||| ||| || || |||| | Sbjct 273917 ACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAG 273976 Query 1628161 AACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTT 1628219 ||| || |||||| ||||| ||||||| | | | | || || ||||||| |||||| Sbjct 273977 TACTCGATGATCTCCGTGCAGAGGTTGGA-GCTGCGGATGGTGCCAAGGTTCTTCTGGTT 274035 Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279 | | | ||||| |||| ||||||| ||||||| | || ||| |||||| |||| || Sbjct 274036 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGC 274095 Query 1628280 CGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNN 1628339 | ||| |||||| |||||| || | || || | | || | |||| Sbjct 274096 CTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCATCTG 274155 Query 1628340 NNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGC 1628399 || || || |||||||||| ||| |||||| || Sbjct 274156 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 274215 Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459 |||| || || | ||| | |||||| || || | | | ||| |||||||| Sbjct 274216 CTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTC 274275 Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519 |||| || ||| || ||||| || || || ||||||||||||||||||||| Sbjct 274276 GGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTT 274335 Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579 || || | |||||| | ||||||||||| ||||| |||||| ||| || || Sbjct 274336 GCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGC 274395 Query 1628580 GCCCTTGCGCTTGCCGCCGCC 1628600 ||| ||| ||| ||| || Sbjct 274396 ACCCGGGCGTTTGTTGCCACC 274416 Score = 93.3 bits (102), Expect = 5e-13 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || || || || | || || || ||| |||||||||| |||| | Sbjct 273363 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 273422 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 ||| | |||| ||||||||| ||||||||| || | || || |||||| |||| | Sbjct 273423 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 273482 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512 |||| || |||||||| | |||||||| | || || || | || |||||||||||| Sbjct 273483 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCT-GCTCCTTCAAAGCGTCCCAGTCC 273541 Query 1627513 CAG 1627515 ||| Sbjct 273542 CAG 273544 >seq1828 Length=310077 Score = 147 bits (162), Expect = 3e-29 Identities = 98/109 (90%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||||||||||||||| || |||||| | || |||||| | || |||||| Sbjct 101994 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTCGGTTGCAAGACCGTCGCCAAC 102053 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 102054 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACCTTCAACATCA 102102 >seq2328 Length=411296 Score = 118 bits (130), Expect = 1e-20 Identities = 229/327 (70%), Gaps = 17/327 (5%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| | || ||||| Sbjct 56851 GCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATG 56910 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | |||||| |||| | ||||||| ||| || || |||| || Sbjct 56911 TTCTCCATAAAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATTGCCAAGAGCAAC- 56969 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || || ||||| ||||| ||||| |||||||| ||| ||| || ||||||||||| Sbjct 56970 CAAG-AGACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGA 57028 Query 868869 --TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 |||||| | ||||| | |||| ||| ||||| | |||||||| ||| || ||||| Sbjct 57029 GCAGAGCGCAA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGAC 57086 Query 868927 GATGATCTGCCT---GGGCACGTCGGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCA 868982 || || | ||| | | | || | || | || |||| | | | |||||| | Sbjct 57087 AATAATGT-CCTCAATGACCTGCTTGCTGGGGCGGTTCTTGAGGTG---AGAGTAGAGGA 57142 Query 868983 GGCAGGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||||||||| ||| | ||||| Sbjct 57143 GGCAGGCAAAGTCGGTGTGGAGACCCT 57169 Score = 113 bits (124), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| || || ||||| || || ||||| Sbjct 57165 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTT 57224 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| || ||| ||||| |||||||||||||| || Sbjct 57225 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAA 57284 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCC--CTCCTTGTTGATCCACTTCATCGCC 869356 | | | ||| |||| ||| ||| |||| | ||| | | |||||||||||| ||| Sbjct 57285 GGCAACGAGGCGCTGGGCGAAG-----GAGGACTTCTCGTCGCTGATCCACTTCAGAGCC 57339 Query 869357 CAGTCGGCCTTTTT 869370 ||||||||||| || Sbjct 57340 CAGTCGGCCTTCTT 57353 >seq2640 Length=74610 Score = 113 bits (124), Expect = 6e-19 Identities = 254/373 (68%), Gaps = 18/373 (5%) Strand=Plus/Minus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||| ||||||| | |||||||| || || |||| | | | ||||||||||||||||||| Sbjct 53178 GGCAGCGGCGCCAATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 53120 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||| ||||| | |||| |||||| |||| Sbjct 53119 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCACGGTGGAGCTGGGACTCGGTGGTGC 53060 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGC---CAAATAAGGGGCCACCAGA-GGA 1726867 | ||||| | |||||| | | | ||| || || | |||| ||| || Sbjct 53059 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCAAGGAACTGCGGGG-----AGATGGT 53005 Query 1726868 CT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCG 1726926 | ||| | |||| ||| | |||| || | ||||| || || ||||| || || | Sbjct 53004 GTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTG 52948 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 ||| || |||||| | | | | | | ||||| || |||||| || Sbjct 52947 GCGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATATCCGGGTCGTTGAT 52888 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 ||||||||||| |||||||| || || ||||| |||| ||||||||||||| ||||| Sbjct 52887 GAGGCCCTTCCAGCCGACGGTGGTACGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 52828 Query 1727047 AAGCGCGTCGCCG 1727059 || ||||||| Sbjct 52827 GAG---GTCGCCG 52818 >seq2377 Length=307564 Score = 105 bits (116), Expect = 8e-17 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| || || |||||| |||| |||| | || |||||| | | Sbjct 37375 TCGACGTCGTCCGTAACCGCATCAAAGGTTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 37316 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | | || ||||||||||||||| || | || || | |||||||| | Sbjct 37315 GCCGCCACAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAG 37256 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||| | || |||||||||||||||| ||| | || |||||| Sbjct 37255 CTCTCCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 37196 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCG 1574236 ||| | | |||||||| | || | |||||| |||||||| || || Sbjct 37195 AGTCCAACAAGATCATCGAGCCGCTGC--AGTCGCGATGCGCCATCCTCCG 37147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106901540678032