Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 140 3e-28
seq2064 107 2e-18
seq1255 95.1 1e-14
>seq1484
Length=366709
Score = 140 bits (154), Expect = 3e-28
Identities = 1014/1617 (63%), Gaps = 56/1617 (3%)
Strand=Plus/Plus
Query 138424 CCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAG 138483
||||| | ||||||||||| || ||||| ||||| ||| | || | || | |
Sbjct 273287 CCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCGACAAGG 273346
Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543
|| || | || | ||| | |||||| || ||||| || | || || || |||
Sbjct 273347 TCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAG 273406
Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603
|||||| |||| | |||||||| | |||||||| |||| ||||| | ||| | ||
Sbjct 273407 ATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCA 273466
Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTT- 138662
||||||||| ||| || | |||||| || || | |||||| ||||||| | |||||
Sbjct 273467 GTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTC 273526
Query 138663 -GAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACA 138721
|||| | ||||||||| | ||| || || |||||||| |||||||| | |
Sbjct 273527 AAAGCGTC--CCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGA 273584
Query 138722 TTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACT 138781
| ||| | |||| || ||||||| | ||| || ||| | ||||
Sbjct 273585 TGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCA--- 273641
Query 138782 CGTTGC-TCGCC---TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC 138837
| ||| || | ||| ||| | | ||| || || || |||| || || ||
Sbjct 273642 -GCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGG 273700
Query 138838 AATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCT 138897
|| ||||| | |||| | |||||||| || | ||| || || || || ||
Sbjct 273701 TCGCGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCC 273760
Query 138898 TGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---GAT 138953
|| || || | || | ||||| || |||| || ||| ||||| || || |
Sbjct 273761 TGGACACCGAGACCAATGGGGCGGTGACGCA----TGTTGCTGTTGCGAGCCTCCTGAAC 273816
Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATG 139013
||| || | ||| || ||||||||| |||| | || || || || |||| || |
Sbjct 273817 AGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGT-GACCT 273875
Query 139014 CTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGAC-GACGTCGACAAATTTG 139071
| | | | | | || ||||| |||| |||||| ||| || | || | |||
Sbjct 273876 CGTGGAGCTTCTGGAAGTCGTAGACGCCCTCGTTGTAGTCAACAAAGGTGGGCAA----- 273930
Query 139072 TTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACA 139131
| | | |||||| | |||||| ||||| || || || || ||| ||| ||||
Sbjct 273931 --GGC---GAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATG 273985
Query 139132 ATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGG 139191
|| || | || | || | ||| || || | || | || ||||| || |||
Sbjct 273986 ATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGG 274045
Query 139192 TTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251
|| ||||| ||||| ||||| | || ||||||| || || | ||| | |||
Sbjct 274046 TTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATG 274105
Query 139252 AATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCGTA 139307
| | | | | || | || ||| || | | | | || |||||||
Sbjct 274106 GCATACCAGAGCTTCTGGGCCTTCATGGTCTTG-CGACCCT--TGCCCATC-TGCTCGTA 274161
Query 139308 CTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTC 139367
||| ||||| | | ||||| || |||||| ||| | || | | |||| ||
Sbjct 274162 CTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTT 274221
Query 139368 AGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAAT 139427
|| |||||||| | ||| | |||||| || || | | ||||||| || || |||||
Sbjct 274222 GGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAAT 274281
Query 139428 CCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCAT 139487
||| | ||||| | | || || || || ||| || ||| ||
Sbjct 274282 CCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAG 274341
Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTT 139547
| | ||| || || || || |||||||| || || || |||||||| | || ||
Sbjct 274342 ATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGG 274401
Query 139548 CCGT---TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604
||| |||||||| || ||||||| || ||| || ||||| || || | ||| ||
Sbjct 274402 GCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGG 274461
Query 139605 CTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG----ATGGGA-CTGTTGCGAGCTCGG 139659
| | |||| ||| || ||||| |||| ||| || ||| | | || || |||
Sbjct 274462 GACGACACCGTTCGAGGTACCGTTAGTGC--CGGCAATATAGGAGCCGGTG---GCACGG 274516
Query 139660 ACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCG 139718
| | ||| || |||| || || || ||| | | ||||| || | ||||| || |
Sbjct 274517 ATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTG 274576
Query 139719 TAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGA 139778
| || ||||| ||||| || ||| |||| ||| ||| || ||||| || ||
Sbjct 274577 -AGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGA 274635
Query 139779 AAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTG 139838
|| || | | || || || || || || ||| ||||| ||||| | ||
Sbjct 274636 CAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTT 274695
Query 139839 TTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGAC 139898
||||||||| | ||| ||||||||| ||| | ||| || || |||||| ||
Sbjct 274696 GCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAAC 274755
Query 139899 AGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG 139958
| ||| ||||| | ||| || ||| | ||||| | | ||| || | || ||
Sbjct 274756 GGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAG 274815
Query 139959 ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCGAGCGCATA 140015
|| |||| | ||||||| |||| || || |||||||| ||| | ||||
Sbjct 274816 GTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATA 274872
>seq2064
Length=287033
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| |||| || || || || || |||||||| || || || ||| | |
Sbjct 186248 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 186307
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| ||||| || || || || || ||||| ||
Sbjct 186308 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 186367
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| || || || ||||| ||||| | | | |||| || || |||
Sbjct 186368 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 186427
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| |||||||| || || || | || | || | ||||||||
Sbjct 186428 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGG 186474
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | ||||| || || || || || || || || | |
Sbjct 186476 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 186535
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || |||||||||||
Sbjct 186536 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 186595
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || || || || || ||| |||||||| | | | || || || |||
Sbjct 186596 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 186655
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || ||| | || | || |||| |||||
Sbjct 186656 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGG 186702
>seq1255
Length=235273
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || ||||| ||||| || || || || || | ||
Sbjct 166234 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 166293
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || || ||
Sbjct 166294 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 166353
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||| || || || ||||| ||||| | | | | || || || |||
Sbjct 166354 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 166413
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| || ||||| || || || |||||||| ||||
Sbjct 166414 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCG 166448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449881313706880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |