Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1484 140 3e-28 seq2064 107 2e-18 seq1255 95.1 1e-14 >seq1484 Length=366709 Score = 140 bits (154), Expect = 3e-28 Identities = 1014/1617 (63%), Gaps = 56/1617 (3%) Strand=Plus/Plus Query 138424 CCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAG 138483 ||||| | ||||||||||| || ||||| ||||| ||| | || | || | | Sbjct 273287 CCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCGACAAGG 273346 Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || | || | ||| | |||||| || ||||| || | || || || ||| Sbjct 273347 TCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAG 273406 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| |||| | |||||||| | |||||||| |||| ||||| | ||| | || Sbjct 273407 ATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCA 273466 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTT- 138662 ||||||||| ||| || | |||||| || || | |||||| ||||||| | ||||| Sbjct 273467 GTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTC 273526 Query 138663 -GAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACA 138721 |||| | ||||||||| | ||| || || |||||||| |||||||| | | Sbjct 273527 AAAGCGTC--CCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGA 273584 Query 138722 TTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACT 138781 | ||| | |||| || ||||||| | ||| || ||| | |||| Sbjct 273585 TGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCA--- 273641 Query 138782 CGTTGC-TCGCC---TCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC 138837 | ||| || | ||| ||| | | ||| || || || |||| || || || Sbjct 273642 -GCTGCACCGACATGGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGG 273700 Query 138838 AATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCT 138897 || ||||| | |||| | |||||||| || | ||| || || || || || Sbjct 273701 TCGCGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCC 273760 Query 138898 TGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GCTTC---GAT 138953 || || || | || | ||||| || |||| || ||| ||||| || || | Sbjct 273761 TGGACACCGAGACCAATGGGGCGGTGACGCA----TGTTGCTGTTGCGAGCCTCCTGAAC 273816 Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATG 139013 ||| || | ||| || ||||||||| |||| | || || || || |||| || | Sbjct 273817 AGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGT-GACCT 273875 Query 139014 CTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGAC-GACGTCGACAAATTTG 139071 | | | | | | || ||||| |||| |||||| ||| || | || | ||| Sbjct 273876 CGTGGAGCTTCTGGAAGTCGTAGACGCCCTCGTTGTAGTCAACAAAGGTGGGCAA----- 273930 Query 139072 TTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACA 139131 | | | |||||| | |||||| ||||| || || || || ||| ||| |||| Sbjct 273931 --GGC---GAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATG 273985 Query 139132 ATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGG 139191 || || | || | || | ||| || || | || | || ||||| || ||| Sbjct 273986 ATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGG 274045 Query 139192 TTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 || ||||| ||||| ||||| | || ||||||| || || | ||| | ||| Sbjct 274046 TTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATG 274105 Query 139252 AATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCGTA 139307 | | | | | || | || ||| || | | | | || ||||||| Sbjct 274106 GCATACCAGAGCTTCTGGGCCTTCATGGTCTTG-CGACCCT--TGCCCATC-TGCTCGTA 274161 Query 139308 CTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTC 139367 ||| ||||| | | ||||| || |||||| ||| | || | | |||| || Sbjct 274162 CTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTT 274221 Query 139368 AGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAAT 139427 || |||||||| | ||| | |||||| || || | | ||||||| || || ||||| Sbjct 274222 GGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAAT 274281 Query 139428 CCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCAT 139487 ||| | ||||| | | || || || || ||| || ||| || Sbjct 274282 CCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAG 274341 Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTT 139547 | | ||| || || || || |||||||| || || || |||||||| | || || Sbjct 274342 ATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGG 274401 Query 139548 CCGT---TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 ||| |||||||| || ||||||| || ||| || ||||| || || | ||| || Sbjct 274402 GCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGG 274461 Query 139605 CTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG----ATGGGA-CTGTTGCGAGCTCGG 139659 | | |||| ||| || ||||| |||| ||| || ||| | | || || ||| Sbjct 274462 GACGACACCGTTCGAGGTACCGTTAGTGC--CGGCAATATAGGAGCCGGTG---GCACGG 274516 Query 139660 ACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCG 139718 | | ||| || |||| || || || ||| | | ||||| || | ||||| || | Sbjct 274517 ATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTG 274576 Query 139719 TAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGA 139778 | || ||||| ||||| || ||| |||| ||| ||| || ||||| || || Sbjct 274577 -AGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGA 274635 Query 139779 AAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTG 139838 || || | | || || || || || || ||| ||||| ||||| | || Sbjct 274636 CAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTT 274695 Query 139839 TTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGAC 139898 ||||||||| | ||| ||||||||| ||| | ||| || || |||||| || Sbjct 274696 GCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAAC 274755 Query 139899 AGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG 139958 | ||| ||||| | ||| || ||| | ||||| | | ||| || | || || Sbjct 274756 GGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAG 274815 Query 139959 ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCGAGCGCATA 140015 || |||| | ||||||| |||| || || |||||||| ||| | |||| Sbjct 274816 GTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATA 274872 >seq2064 Length=287033 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || |||||||| || || || ||| | | Sbjct 186248 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 186307 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| || || || || || ||||| || Sbjct 186308 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 186367 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||||| ||||| | | | |||| || || ||| Sbjct 186368 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 186427 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || | || | || | |||||||| Sbjct 186428 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGG 186474 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || || || || || | | Sbjct 186476 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 186535 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||||||||| Sbjct 186536 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 186595 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || ||| |||||||| | | | || || || ||| Sbjct 186596 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 186655 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| | || | || |||| ||||| Sbjct 186656 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGG 186702 >seq1255 Length=235273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| ||||| || || || || || | || Sbjct 166234 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 166293 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 166294 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 166353 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| ||||| | | | | || || || ||| Sbjct 166354 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 166413 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || |||||||| |||| Sbjct 166414 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCG 166448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449881313706880