Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1828 152 8e-31 seq2377 131 3e-24 seq1484 129 9e-24 seq2328 107 3e-17 seq1434 86.0 1e-10 >seq1828 Length=310077 Score = 152 bits (168), Expect = 8e-31 Identities = 99/109 (91%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||||||||||||| | || ||||||||||| |||||| Sbjct 101994 GCCTCCAACTACCTCGACATCAAGCCCCTCCTCGATGTCGGTTGCAAGACCGTCGCCAAC 102053 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 102054 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGCAAGACCTTCAACATCA 102102 >seq2377 Length=307564 Score = 131 bits (144), Expect = 3e-24 Identities = 207/295 (70%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204 |||||||| |||| |||||| | ||| | | ||||| || |||||| | | Sbjct 37373 GACGTCGTCCGTAACCGCATCAAAGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 37316 Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264 ||||||||||| | | || ||||| ||||||||| || | || || | |||||||| | Sbjct 37315 GCCGCCACAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAG 37256 Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324 | ||||| || ||||| | ||| ||||||||||||| || || | ||||||||| Sbjct 37255 CTCTCCGCCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 37196 Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384 ||| | | ||||||| | || ||| || ||||||||| | || | || || | Sbjct 37195 AGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTCCGGTACGCCCGGC 37136 Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 ||||||||| ||| | | | ||| |||| |||| ||||| || || ||||| Sbjct 37135 TCACCGACGAGCAGGTGGTCAAGCGGCTGCTGCAGATCATCGAAGCGGAGAAGGT 37081 >seq1484 Length=366709 Score = 129 bits (142), Expect = 9e-24 Identities = 332/504 (66%), Gaps = 19/504 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| ||||| ||||||||||| || | ||||| || Sbjct 274417 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGA 274476 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| || | |||| ||| | ||| || | || || | || Sbjct 274477 GGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACC 274536 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| |||||| ||||||||| | ||||| | || || || |||||||| ||||| Sbjct 274537 AATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTC 274596 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||||| |||||||||| | || ||||| || || || | | | || || Sbjct 274597 AATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACC 274656 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTG--GGACATGGCCTCGTAG 2073837 || |||||||| ||||| | || ||| | || | ||| ||||| | |||| Sbjct 274657 AGCGTTGAAGAGTGTGGGAGAAGCGTGGGTG-AAGAAT-TTGCTCGACATCAGGTTGTAG 274714 Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897 || ||| |||||| | |||||| || || || || | |||| Sbjct 274715 GTTTCGATGACGCGC------------TCAACGTCGTCA---CCCCAGATACCAACGGCG 274759 Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAG 2073957 || ||||||||||||| |||||||| |||| | | | || | |||| ||||| Sbjct 274760 ACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTAT 274819 Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017 || | || |||| | ||| || || |||| | |||||| || | | |||| Sbjct 274820 GATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATG 274879 Query 2074018 GCGGCGTCGAGGGCCTCCTTGTGC 2074041 || | ||| || | ||||||||| Sbjct 274880 GCAGAGTCAAGCTCTTCCTTGTGC 274903 Score = 100 bits (110), Expect = 5e-15 Identities = 288/444 (65%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||| ||||| ||||||| | || ||||||| ||||||| |||||| Sbjct 273978 ACTCGATGATCTCCGTGCAGAGGTTGGAG--CTGCGGATGGTGCCAAGGTTCTTCTGGTT 274035 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| | ||||| |||| ||||||| |||||| | || || |||||| |||| || Sbjct 274036 GCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGC 274095 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCT-CGCGCG--GCCCTN 2071748 | || |||||| |||| | | | || || |||| | || | |||| Sbjct 274096 CTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCAT---GGTCTTGCGACCCTTGCCCAT 274152 Query 2071749 NNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGG 2071808 | | ||| || || | |||||| ||| ||| |||||| || Sbjct 274153 CTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGG 274212 Query 2071809 CGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAG 2071868 |||| ||||| | ||| | |||||| ||| || | || | ||| || || Sbjct 274213 GCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAG 274272 Query 2071869 GTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 2071928 |||| |||| || || || || || || || || |||||||||||||||||| Sbjct 274273 GTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTT 274332 Query 2071929 CTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 2071988 ||| ||| || | |||||| || ||||||||||| ||||| |||||| ||| || Sbjct 274333 CTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAA 274392 Query 2071989 GGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||| ||| ||| ||| || Sbjct 274393 AGCACCCGGGCGTTTGTTGCCACC 274416 Score = 86.0 bits (94), Expect = 1e-10 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 2069603 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGA 2069662 ||||||| || || || || | || || || ||| |||||||||| ||| | Sbjct 273363 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 273422 Query 2069663 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 2069722 ||| | |||| ||||||||| ||||||||| || | || || |||||| |||| | Sbjct 273423 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 273482 Query 2069723 CGAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCC 2069782 |||| || |||||||| | |||| ||| | | || || || ||||||||||||| Sbjct 273483 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCC 273542 Query 2069783 AG 2069784 || Sbjct 273543 AG 273544 >seq2328 Length=411296 Score = 107 bits (118), Expect = 3e-17 Identities = 165/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||| | || ||| ||| || |||||||||||||| | || ||||| |||||| Sbjct 56860 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATA 56919 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025 | |||||| |||| | | |||| ||| || || |||| || |||| || | Sbjct 56920 AAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATTGCCAAGAGCAAC-CAAG-AGAC 56977 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGA--TGAGCGC 794083 |||| |||||||| ||||||||||| ||| ||| || ||||||||||| |||||| Sbjct 56978 GGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGC 57037 Query 794084 CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGA 794133 | ||||| | |||| | | ||||| | |||||||| ||| || |||| Sbjct 57038 AA--GGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGA 57085 Score = 100 bits (110), Expect = 5e-15 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 || ||||||| ||||||||||||||| | |||||||||||||||||||||||| || || Sbjct 57467 GGCTCCTTGATGTAGGTGTCGATGAGCAACGAGTAGGTCTCTGAGTGGATGTTCTCCATC 57526 Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666 ||| ||||||||||| ||||| Sbjct 57527 ATGATTTGGAAGCCATAGAAGCA 57549 Score = 95.1 bits (104), Expect = 2e-13 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| || || ||||| || || ||||| Sbjct 57165 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGACCACGCTT 57224 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| || ||| ||||| |||||||||||||| || Sbjct 57225 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAA 57284 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCC--CTCTTTGTTGATCCACTTCATCGCC 794517 | | ||||| |||| ||| || | ||| | ||| | | |||||||||||| ||| Sbjct 57285 GGCAACGAGGCGCTGGGCGAAGG-----AGGACTTCTCGTCGCTGATCCACTTCAGAGCC 57339 Query 794518 CACTCTGCCTTTTT 794531 || || ||||| || Sbjct 57340 CAGTCGGCCTTCTT 57353 >seq1434 Length=173110 Score = 86.0 bits (94), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| || || |||||||||||| ||||||| || ||| ||| Sbjct 160387 GTACTTGGTGACGGCCTTGGTGCCTTCCGAGACGGCGTGCTTGGCCAGCTCACCGGGCAG 160446 Query 1485531 GATCAGGCGCAC 1485542 ||| ||||| || Sbjct 160447 GATGAGGCGAAC 160458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915938339271344