Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 306 4e-78
seq1255 118 1e-21
seq2328 116 4e-21
seq1448 105 6e-18
seq2064 102 8e-17
>seq1484
Length=366709
Score = 306 bits (338), Expect = 4e-78
Identities = 1008/1545 (65%), Gaps = 53/1545 (3%)
Strand=Plus/Plus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || ||||| ||||| || || || || || ||| | || | |||| || | ||
Sbjct 273365 TTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 273424
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| ||
Sbjct 273425 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACG 273484
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
|| || |||||||| | |||| | | || || | ||||| ||| |||||||||||
Sbjct 273485 AGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAG 273544
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCT 148498
|| ||| || | || ||||||||||||||||| || ||||| | | || |||||
Sbjct 273545 AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCC-CTGAGAGACGGGGGA 273603
Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCG 148557
|||||||||| ||| || || | | || ||||| | ||| | | ||| |
Sbjct 273604 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGG 273662
Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTC---GCTT 148613
| ||| ||| || ||||| || | | |||| || | ||| | |||
Sbjct 273663 CAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAG----GTCGCGAGCCTCAGGAGAC 273718
Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673
||| | ||||| ||||| || || || || ||||| ||||| || || | ||||||
Sbjct 273719 TCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATG 273778
Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGAT 148732
|| ||||| |||||| | ||| || ||| || | || ||||||||| ||||||
Sbjct 273779 GGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGAT 273837
Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792
||| ||| || ||||| || || |||| || | | | ||| | || |||||
Sbjct 273838 GATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 273897
Query 148793 ---------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACAC 148843
|||| || || | | | || || ||||| ||||| || ||||| ||
Sbjct 273898 GACGCCCTCGTTGTAGTCAACAAAG-GTGGG--CAAGGCGAGCGAGGCCAGGTTGCAGAC 273954
Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGAT 148903
|| |||||| || |||| |||||| | |||||| | ||| || ||| || |||
Sbjct 273955 CGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGAT 274014
Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
||| | |||||| || |||||||||| |||| || |||||||| |||||| | ||
Sbjct 274015 GGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGG 274074
Query 148964 TCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACT 149021
|||||| || ||| | || | ||| | | | || | ||| || ||
Sbjct 274075 GTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGGGC-----CT 274127
Query 149022 TGCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACG 149073
| || || | |||||||| ||||||||| | ||| | || |||||||
Sbjct 274128 TCATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCGAACT 274184
Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133
||||||||||||| ||| | || || ||||||| || ||||||||||| | ||| | |
Sbjct 274185 CCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCC 274244
Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193
||| | | || | |||||| || || ||||| | |||||| ||| | ||||| |
Sbjct 274245 CGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCAC 274304
Query 149194 GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCG 149253
| || || || ||| ||| |||||| | | | | ||| | || |
Sbjct 274305 GGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGG 274364
Query 149254 CGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG---CTTGCCGCCCTGGTCGA 149310
||||||| ||||||| ||| | |||| || ||| ||| ||||| ||||||||||
Sbjct 274365 CGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGA 274424
Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370
||| ||| | ||||||| || || || | ||| || | | || | | || ||||
Sbjct 274425 CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGT 274484
Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430
|||| | ||| |||| || || | || ||||||| || ||||| |
Sbjct 274485 TAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCAC 274544
Query 149431 CGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489
|| | ||| ||||| |||| |||| ||| || |||||| ||||| || |
Sbjct 274545 CGGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCGTAGATACCCTCAATAGAG 274603
Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549
|| ||||||| | || ||||| ||| ||| || | | | || || || |
Sbjct 274604 TCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTG 274663
Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGGCTCATCATCTCGTACGACTCGAG 149608
|| | ||||| ||||| || || |||| || | ||||| | ||| | ||||
Sbjct 274664 AAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCG-ACATCAGGTTGTAGGTTTCGAT 274722
Query 149609 CACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGG 149668
||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| ||
Sbjct 274723 GACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGG 274782
Query 149669 TCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCC 149728
|| ||| || | ||| ||| ||||| | ||| | || | |||||| ||||
Sbjct 274783 TCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCC 274842
Query 149729 AAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
|| || | ||||| ||||||||| | | | | ||||| | |||
Sbjct 274843 GAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 274887
>seq1255
Length=235273
Score = 118 bits (130), Expect = 1e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || ||||| ||| | ||| ||||||||||||||| ||
Sbjct 166430 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 166371
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || || ||||||||||| || |||||||| |||||||| |||||| ||||
Sbjct 166370 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 166311
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||||| | |||||| || | ||||| || || || || || ||
Sbjct 166310 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 166251
Query 133644 TTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 166250 TTGACGAAGATCTGCATG 166233
>seq2328
Length=411296
Score = 116 bits (128), Expect = 4e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| |||||||| ||||| || ||||| || || || || ||||||||| || |||
Sbjct 57142 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 57201
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
|| || ||||| | || | |||||| |||| |||| ||| ||| || |||
Sbjct 57202 AGACCAGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 57261
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819
|| | ||||| ||| ||| ||||| || | ||||| ||| || | | | ||| | |
Sbjct 57262 AAGATACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCG 57321
Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
||||||||||| ||||| |||||||| ||||| | ||| ||
Sbjct 57322 CTGATCCACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 57365
>seq1448
Length=227951
Score = 105 bits (116), Expect = 6e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||||||||||||||| ||| | || | |||||||||||||| || ||||| |||||
Sbjct 172986 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTT 172927
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | |||||| | || ||| || || | ||| |
Sbjct 172926 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 172867
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652
||| || || ||||| || || ||||||
Sbjct 172866 GGTCTTACCCGTCAGGGTCTTCACGAAA 172839
>seq2064
Length=287033
Score = 102 bits (112), Expect = 8e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||| ||||| || ||||| ||| || ||| |||||| |||
Sbjct 186225 AAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 186166
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| | || | |||||||||||||| || ||||| |||||||| |||
Sbjct 186165 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATC 186106
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | || |||| || ||| || || | ||||| ||| ||||||
Sbjct 186105 TTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 186046
Query 133635 GTCAGAGTTTTTACGA 133650
|| || || || ||||
Sbjct 186045 GTAAGCGTCTTGACGA 186030
Score = 89.7 bits (98), Expect = 5e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||| ||||| || ||||| ||| || ||| |||||| |||
Sbjct 185941 AAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 185882
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| | || | |||||||||||||| || ||||| |||||||| |||
Sbjct 185881 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATC 185822
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | || |||| || ||| || || | ||| | ||| ||||||
Sbjct 185821 TTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTGCCG 185762
Query 133635 GT 133636
||
Sbjct 185761 GT 185760
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| || || ||||| || ||||| ||| || ||| |||||| |||||||||||
Sbjct 186444 GTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 186385
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | |||||||||||||| ||||| || ||||| || ||||| ||||
Sbjct 186384 GCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTG 186325
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||| | | || || || | ||| | || ||||| || || ||
Sbjct 186324 ACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTC 186265
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 186264 TTAACGAAGATCTGCAT 186248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483403300167040
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