Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1484 306 4e-78 seq1255 118 1e-21 seq2328 116 4e-21 seq1448 105 6e-18 seq2064 102 8e-17 >seq1484 Length=366709 Score = 306 bits (338), Expect = 4e-78 Identities = 1008/1545 (65%), Gaps = 53/1545 (3%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| ||||| || || || || || ||| | || | |||| || | || Sbjct 273365 TTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 273424 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||||||||||||||| ||||||| ||| | || || |||||| ||| || Sbjct 273425 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACG 273484 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 || || |||||||| | |||| | | || || | ||||| ||| ||||||||||| Sbjct 273485 AGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAG 273544 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCT 148498 || ||| || | || ||||||||||||||||| || ||||| | | || ||||| Sbjct 273545 AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCC-CTGAGAGACGGGGGA 273603 Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCG 148557 |||||||||| ||| || || | | || ||||| | ||| | | ||| | Sbjct 273604 ACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGG 273662 Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGC-CGACTC---GCTT 148613 | ||| ||| || ||||| || | | |||| || | ||| | ||| Sbjct 273663 CAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAG----GTCGCGAGCCTCAGGAGAC 273718 Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673 ||| | ||||| ||||| || || || || ||||| ||||| || || | |||||| Sbjct 273719 TCGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATG 273778 Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGAT 148732 || ||||| |||||| | ||| || ||| || | || ||||||||| |||||| Sbjct 273779 GGGCGGTGACGCATGTTGCTGTTGCGAGC-CTCCTGAACAGGGTAGTGGTTGACGTCGAT 273837 Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792 ||| ||| || ||||| || || |||| || | | | ||| | || ||||| Sbjct 273838 GATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 273897 Query 148793 ---------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACAC 148843 |||| || || | | | || || ||||| ||||| || ||||| || Sbjct 273898 GACGCCCTCGTTGTAGTCAACAAAG-GTGGG--CAAGGCGAGCGAGGCCAGGTTGCAGAC 273954 Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGAT 148903 || |||||| || |||| |||||| | |||||| | ||| || ||| || ||| Sbjct 273955 CGCGACCTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGAT 274014 Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||| | |||||| || |||||||||| |||| || |||||||| |||||| | || Sbjct 274015 GGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGG 274074 Query 148964 TCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACT 149021 |||||| || ||| | || | ||| | | | || | ||| || || Sbjct 274075 GTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCA--GAGCTTCTGGGC-----CT 274127 Query 149022 TGCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACG 149073 | || || | |||||||| ||||||||| | ||| | || ||||||| Sbjct 274128 TCATGGTC-TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGC--CTCGAACT 274184 Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGC 149133 ||||||||||||| ||| | || || ||||||| || ||||||||||| | ||| | | Sbjct 274185 CCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCC 274244 Query 149134 CGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC 149193 ||| | | || | |||||| || || ||||| | |||||| ||| | ||||| | Sbjct 274245 CGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCAC 274304 Query 149194 GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCG 149253 | || || || ||| ||| |||||| | | | | ||| | || | Sbjct 274305 GGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGG 274364 Query 149254 CGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG---CTTGCCGCCCTGGTCGA 149310 ||||||| ||||||| ||| | |||| || ||| ||| ||||| |||||||||| Sbjct 274365 CGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGA 274424 Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370 ||| ||| | ||||||| || || || | ||| || | | || | | || |||| Sbjct 274425 CGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGT 274484 Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430 |||| | ||| |||| || || | || ||||||| || ||||| | Sbjct 274485 TAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCAC 274544 Query 149431 CGCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489 || | ||| ||||| |||| |||| ||| || |||||| ||||| || | Sbjct 274545 CGGCCATCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCGTAGATACCCTCAATAGAG 274603 Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549 || ||||||| | || ||||| ||| ||| || | | | || || || | Sbjct 274604 TCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTG 274663 Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGGCTCATCATCTCGTACGACTCGAG 149608 || | ||||| ||||| || || |||| || | ||||| | ||| | |||| Sbjct 274664 AAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCTCG-ACATCAGGTTGTAGGTTTCGAT 274722 Query 149609 CACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGG 149668 ||||| || | ||| || || ||| || | |||||| ||||| | ||| ||||| || Sbjct 274723 GACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGG 274782 Query 149669 TCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCC 149728 || ||| || | ||| ||| ||||| | ||| | || | |||||| |||| Sbjct 274783 TCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCC 274842 Query 149729 AAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 || || | ||||| ||||||||| | | | | ||||| | ||| Sbjct 274843 GAAATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGCAGAGTC 274887 >seq1255 Length=235273 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 166430 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 166371 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| |||||||| |||||| |||| Sbjct 166370 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 166311 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 166310 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 166251 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 166250 TTGACGAAGATCTGCATG 166233 >seq2328 Length=411296 Score = 116 bits (128), Expect = 4e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||| || ||||| || || || || ||||||||| || ||| Sbjct 57142 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTC 57201 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || || ||||| | || | |||||| |||| |||| ||| ||| || ||| Sbjct 57202 AGACCAGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 57261 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||||| ||| ||| ||||| || | ||||| ||| || | | | ||| | | Sbjct 57262 AAGATACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAGGACTTCTCGTCG 57321 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||||||| ||||| |||||||| ||||| | ||| || Sbjct 57322 CTGATCCACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 57365 >seq1448 Length=227951 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || | |||||||||||||| || ||||| ||||| Sbjct 172986 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTT 172927 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || || | ||| | Sbjct 172926 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 172867 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 172866 GGTCTTACCCGTCAGGGTCTTCACGAAA 172839 >seq2064 Length=287033 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| ||| || ||| |||||| ||| Sbjct 186225 AAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 186166 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | |||||||||||||| || ||||| |||||||| ||| Sbjct 186165 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATC 186106 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || |||| || ||| || || | ||||| ||| |||||| Sbjct 186105 TTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCG 186046 Query 133635 GTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 186045 GTAAGCGTCTTGACGA 186030 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| ||| || ||| |||||| ||| Sbjct 185941 AAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGC 185882 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | |||||||||||||| || ||||| |||||||| ||| Sbjct 185881 TGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATC 185822 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || |||| || ||| || || | ||| | ||| |||||| Sbjct 185821 TTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTAATGGTCTTGCCG 185762 Query 133635 GT 133636 || Sbjct 185761 GT 185760 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| ||| || ||| |||||| ||||||||||| Sbjct 186444 GTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 186385 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | |||||||||||||| ||||| || ||||| || ||||| |||| Sbjct 186384 GCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTG 186325 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | || || || | ||| | || ||||| || || || Sbjct 186324 ACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTC 186265 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 186264 TTAACGAAGATCTGCAT 186248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403300167040