Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 152 5e-32
>seq1484
Length=366709
Score = 152 bits (168), Expect = 5e-32
Identities = 969/1535 (63%), Gaps = 39/1535 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || ||||| || || || ||||||| | || | ||| ||| | |||
Sbjct 273365 TTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 273424
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
||||| |||| || ||||| || || || | ||| | || || |||||| ||| ||
Sbjct 273425 TCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACG 273484
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| | || || || | ||||| | ||| | |||||||||| | |||||||||
Sbjct 273485 AGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAG 273544
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132
| ||||||| | || |||||||||||||||||||| | || || | ||||
Sbjct 273545 AGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAA 273604
Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAG-CTTGCCTCGAGCG 147190
|| || |||| |||| || || || |||| | ||| | | || ||| |
Sbjct 273605 CCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCACCGACATG--GTGAGGG 273662
Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250
| | | ||| ||||| || ||| | ||||||||| || || || ||||
Sbjct 273663 CAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACTCGA 273722
Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310
| ||||| |||||| || |||||||| || | |||||||| ||||| || || || |
Sbjct 273723 AGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGC 273782
Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAAT 147368
| || |||||| | | || || || | || ||||||||| || || ||
Sbjct 273783 GGTGACGCATGTTGCT--GTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGAT 273840
Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428
|||| ||||| || || ||||| | || | | ||| |||| ||| || ||
Sbjct 273841 TCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 273900
Query 147429 CCCGTCTTCGACACGTACGCATTGGT--TCACGGCGATAGACGCCAGATTGCAGACGGCC 147486
|| || | | || || ||| || ||||| || ||||| |||||||| ||
Sbjct 273901 GCCCTCGTTG--TAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCG 273958
Query 147487 GTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGAC 147545
||| || |||| ||| ||||| | ||| || | ||| |||||| || |||
Sbjct 273959 ACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGT 274017
Query 147546 TCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 147605
|| | || | ||| ||||| || || ||| || || ||| |||||||| | ||
Sbjct 274018 GCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTT 274077
Query 147606 GCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCG 147662
||| |||||| || | || | ||| | ||| || | ||| || ||
Sbjct 274078 GCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC---AGAGCTTCTGGGCCTTCATGGT 274134
Query 147663 CTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTA 147722
|| ||| |||| | |||||| ||||||||| ||| ||||| ||||||||
Sbjct 274135 CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTA 274194
Query 147723 GCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTT 147782
||| ||||| ||||| || |||| | || ||||| || | ||| ||| | |
Sbjct 274195 GCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTC 274254
Query 147783 AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCA 147842
|| | ||| || || || || | ||| || ||| | ||| || || ||
Sbjct 274255 TACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAAC 274314
Query 147843 ATCCTC---GGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCC 147898
||||| | || | ||||| || || ||| | | | ||| ||||||||||
Sbjct 274315 CTCCTCCTTGCCGTGGTTCTTGCG---CAGATCCAAGAAGTCGA-AGACATCGGCGTGCC 274370
Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACG---CTTTCCGCCCTGGTCGACATGGC 147955
| || |||| ||||| ||| | ||||| || || || ||||||||||| | ||
Sbjct 274371 AAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGC 274430
Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015
| | ||||||| || || || | |||||| | | ||| ||| || ||||| |||
Sbjct 274431 GAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGC 274490
Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCCGCCG 148074
|| | | |||| ||| || | | || || ||||| | |||||||| ||| |
Sbjct 274491 CGGCAATATAGGAGCCGGTGGCACGGA-TGCGATGAACGTTGAGACCAATGCCACCGGCC 274549
Query 148075 TACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTT 148134
||| || || |||||| | || |||||| || || || ||| |
Sbjct 274550 ATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCC 274609
Query 148135 TTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGG 148194
|| | | | | | || || || ||| || | | || || || ||| ||
Sbjct 274610 TTCATGTCGACGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGT 274669
Query 148195 GTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAGCGT 148252
|||||| ||||| || || ||||| | || ||||| | || || || || ||
Sbjct 274670 GTGGGAGAAGCGTGGGTGAAGAATTTGCTCGA--CATCAGGTTGTAGGTTTCGATGACGC 274727
Query 148253 CTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTT 148312
|| | |||||| || || || | ||||| ||||||| ||||||||| |||| |
Sbjct 274728 GCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCT 274787
Query 148313 CGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAG 148371
|||||| |||| || | |||||| || ||| | || | ||| ||| | || ||
Sbjct 274788 CGGCAATCTTG-CCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAA 274846
Query 148372 TACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
|| | ||| | || || | || || |||||||
Sbjct 274847 TATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 274881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476593946674560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |