Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1396 113 5e-20 >seq1396 Length=452294 Score = 113 bits (124), Expect = 5e-20 Identities = 285/440 (65%), Gaps = 44/440 (10%) Strand=Plus/Plus Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 || |||| | ||||| || ||||||| |||||| || ||||||||||| || || |||| Sbjct 169081 CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCAAGGC 169140 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG---------------CTCCCCGT 147100 ||||||| | |||| ||||||||||||||| || ||| |||| Sbjct 169141 CCATGTCACAGGACCGCTGGTACAGCTGGCAGCGCAGGTGGCCCTTTGGTTTCTCTCCGT 169200 Query 147101 C---------------GGCC------------ACGTAAAACTG-GCACAGGATGTGGCAC 147132 | |||| ||||| || || ||| | |||||||| Sbjct 169201 CAGCGGGTGCAATGCGGGCCCGCGGGTAGGAGACGTAGAATTGCGCAAAC-ATGTGGCAA 169259 Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192 ||||| || ||||| ||||||||||||||||| || || | | || | | Sbjct 169260 GGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGAAGGATGCGGCGG 169319 Query 147193 CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCC 147252 | |||||| |||| | || | ||| ||| ||||| || |||||||||||| Sbjct 169320 TCGTACGGGTTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGATCGACGCCCTGGCCC 169379 Query 147253 CCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312 ||| | ||| | ||| || ||| ||| |||||||| | ||| ||||| ||||| Sbjct 169380 GTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAG 169439 Query 147313 ACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGG 147372 || || || ||||||||| | | ||||||| ||| | | | || ||||| | Sbjct 169440 ACAGGGCCGAGGTCGCCGACTTCGCGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGT 169499 Query 147373 GACCCGTGGGCGTCCCAGAT 147392 || |||| | |||||||||| Sbjct 169500 GAGCCGTTGCCGTCCCAGAT 169519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583466877734400