Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq1396 113 5e-20
>seq1396
Length=452294
Score = 113 bits (124), Expect = 5e-20
Identities = 285/440 (65%), Gaps = 44/440 (10%)
Strand=Plus/Plus
Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055
|| |||| | ||||| || ||||||| |||||| || ||||||||||| || || ||||
Sbjct 169081 CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAGGGCACGCCAAGGC 169140
Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG---------------CTCCCCGT 147100
||||||| | |||| ||||||||||||||| || ||| ||||
Sbjct 169141 CCATGTCACAGGACCGCTGGTACAGCTGGCAGCGCAGGTGGCCCTTTGGTTTCTCTCCGT 169200
Query 147101 C---------------GGCC------------ACGTAAAACTG-GCACAGGATGTGGCAC 147132
| |||| ||||| || || ||| | ||||||||
Sbjct 169201 CAGCGGGTGCAATGCGGGCCCGCGGGTAGGAGACGTAGAATTGCGCAAAC-ATGTGGCAA 169259
Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192
||||| || ||||| ||||||||||||||||| || || | | || | |
Sbjct 169260 GGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAGAAGGATGCGGCGG 169319
Query 147193 CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCC 147252
| |||||| |||| | || | ||| ||| ||||| || ||||||||||||
Sbjct 169320 TCGTACGGGTTCGTCTTCAGCTTGTGGATGACCTCGGCGAGCTGATCGACGCCCTGGCCC 169379
Query 147253 CCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTAC 147312
||| | ||| | ||| || ||| ||| |||||||| | ||| ||||| |||||
Sbjct 169380 GTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAG 169439
Query 147313 ACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGG 147372
|| || || ||||||||| | | ||||||| ||| | | | || ||||| |
Sbjct 169440 ACAGGGCCGAGGTCGCCGACTTCGCGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGT 169499
Query 147373 GACCCGTGGGCGTCCCAGAT 147392
|| |||| | ||||||||||
Sbjct 169500 GAGCCGTTGCCGTCCCAGAT 169519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583466877734400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |