Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1484 147 3e-29 seq2328 140 5e-27 seq2377 107 3e-17 seq2640 87.8 3e-11 seq1813 86.0 9e-11 >seq1484 Length=366709 Score = 147 bits (162), Expect = 3e-29 Identities = 336/503 (67%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||||||||| | || ||| |||||||| | | | ||| ||||| |||| || || Sbjct 274903 GCACAAGGAAGAGCTTGACTCTGCCATCGTCTATGACCGCGACTTCAACTACCAATATTT 274844 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||||||| | || ||||| ||| | || | | | |||| | Sbjct 274843 CGGCTTCAAGACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAG 274784 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| |||||||||||||| |||| | |||| || ||||| Sbjct 274783 ACCCCAGCACATGATCATGCGTGTCGCCGTTGG--TATCTGGG-GTGACGACG------- 274734 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGC-AGTTGTTCACCTCAG 259919 | |||| ||| ||| |||||| | |||||| ||| | || |||||| | Sbjct 274733 -----TTGAGCGCGTCATCGAAACCTACAACCTGATGTCG-AGCAAATTCTTCACCCACG 274680 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | ||||| ||||| || || || || || | | ||| || || ||||| || Sbjct 274679 CTTCTCCCACACTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCG 274620 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||||| || || || ||||| ||||| ||||| |||||| ||||| | | Sbjct 274619 TCGACATGAAGGAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGA 274560 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 |||||||| |||||| ||||| ||| | || || | || ||| | ||| ||| Sbjct 274559 TCTCCAAGATGGCCGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCT 274500 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 | | || ||||| ||||| || ||||| | || |||||||| || || || ||| Sbjct 274499 ATATTGCCGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACA 274440 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||||||||||||| Sbjct 274439 ACACTGCTCGCTACGTCGACCAG 274417 >seq2328 Length=411296 Score = 140 bits (154), Expect = 5e-27 Identities = 215/303 (71%), Gaps = 13/303 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| | || | Sbjct 57763 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 57705 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | | ||| || ||| | ||| Sbjct 57704 TGTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTC 57649 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||| |||||||||| || ||| || ||||||||| || ||||||| ||| Sbjct 57648 ATCTCGCACATCCTCGCCTTCTT-CGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGT 57590 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | |||||||| |||| ||||| |||| || || || ||||| || Sbjct 57589 CGAGCGCTTCAGCGGCGAGGTCCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 57530 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || ||||||||| | || |||||||||||| ||||||| Sbjct 57529 CATGATGGAGAACATCCACTCAGAGACCTACTCGTTGCTCATCGACACCTACATCAAGGA 57470 Query 1456068 CCC 1456070 || Sbjct 57469 GCC 57467 Score = 107 bits (118), Expect = 3e-17 Identities = 119/156 (76%), Gaps = 7/156 (4%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| |||||||||||| | | ||| | |||| ||| ||| | Sbjct 57353 AAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTCCTC----CTTCGCCCA 57298 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| ||||| | ||| ||||| |||||||| ||||| ||| || ||| | |||| Sbjct 57297 GCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 57238 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| || || ||||| ||||| Sbjct 57237 CTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCT 57202 Score = 95.1 bits (104), Expect = 2e-13 Identities = 177/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || || ||||| || ||| |||||||| | ||||| | | |||| | ||||| | ||| Sbjct 57092 ATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCC--TTGCG 57035 Query 1456583 CTCA--TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| ||||||||||| ||| | || ||| |||||||||| | || ||||| ||||| Sbjct 57034 CTCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTCGTCGCTGACCG 56977 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 || | | || || ||| || ||| |||| | | |||| |||||| | | Sbjct 56976 TCTCTTGGTTGCTCTTGGC-AATGACAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTA 56918 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| || ||| || | || ||| ||| Sbjct 56917 TGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACC 56858 Query 1456760 CCAAGGCCGGCGT 1456772 |||||||| || Sbjct 56857 AGAAGGCCGGTGT 56845 >seq2377 Length=307564 Score = 107 bits (118), Expect = 3e-17 Identities = 172/247 (70%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| ||||| || | | || |||||||| || || |||||| | |||||||| | Sbjct 37127 CGTCGGTGAGCCGGGCGTACCGGAGGATGGCGCATCGCGACTGCAGCGGCTCGATGATCT 37186 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | ||| ||||||||| | ||| || |||||||| |||| | | ||||| || Sbjct 37187 TGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATCGTTC 37246 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 ||||| || || ||||| | | || | || ||||||||||||||| || | || || Sbjct 37247 GGCGGAGAGCTTGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGAATCACGAGCT 37306 Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCA 333095 ||||||| || || ||||| ||| | ||| |||| ||||||| || || | Sbjct 37307 TGTGGCGGCCCTGGGGCAGGGTGACCTTCTTCTGGGCGAAACCTTTGATGCGGTTACGGA 37366 Query 333096 CGACGTC 333102 ||||||| Sbjct 37367 CGACGTC 37373 >seq2640 Length=74610 Score = 87.8 bits (96), Expect = 3e-11 Identities = 108/143 (76%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| |||| || |||||||||||| |||| | ||||| ||| | || || | ||| Sbjct 53044 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGTGAGCTCGCCTCCGGCCTG 53103 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| || Sbjct 53104 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 53162 Query 165887 CGT--GCG-CACTGCCGCCCAGC 165906 | | ||| | |||||||| ||| Sbjct 53163 CATTGGCGCCGCTGCCGCCAAGC 53185 >seq1813 Length=570218 Score = 86.0 bits (94), Expect = 9e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584 ||||||| |||||||| ||| | || | ||||| |||||||||||| ||| | || Sbjct 33191 CATCGACACGGGCGCCGGTGTCATCGACGCTGACTACCGCGGCGAGGTTAAGGTCCTCCT 33132 Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644 |||||||| |||||||||||| || |||| | || | ||| |||||||| | | Sbjct 33131 CTTCAACCACGCCGACGCCGACTTTGAGGTCGCCGAGGGTGACCGCGTCGCCCAGCTCGT 33072 Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704 ||| || || | |||||| ||| ||||| || || || | || ||| Sbjct 33071 CGTCGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCGGAGCTCGAGGAGAGCGTGCG 33012 Query 334705 CGGCACCGGCGGCTTTGG 334722 |||| | |||||||| || Sbjct 33011 CGGCGCTGGCGGCTTCGG 32994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177531875477152