Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 147 3e-29
seq2328 140 5e-27
seq2377 107 3e-17
seq2640 87.8 3e-11
seq1813 86.0 9e-11
>seq1484
Length=366709
Score = 147 bits (162), Expect = 3e-29
Identities = 336/503 (67%), Gaps = 17/503 (3%)
Strand=Plus/Minus
Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740
||||||||| | || ||| |||||||| | | | ||| ||||| |||| || ||
Sbjct 274903 GCACAAGGAAGAGCTTGACTCTGCCATCGTCTATGACCGCGACTTCAACTACCAATATTT 274844
Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800
|| | ||||||| | || ||||| ||| | || | | | |||| |
Sbjct 274843 CGGCTTCAAGACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGCAAGATTGCCGAGAG 274784
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|||||| | ||| |||||||||||||| |||| | |||| || |||||
Sbjct 274783 ACCCCAGCACATGATCATGCGTGTCGCCGTTGG--TATCTGGG-GTGACGACG------- 274734
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGC-AGTTGTTCACCTCAG 259919
| |||| ||| ||| |||||| | |||||| ||| | || |||||| |
Sbjct 274733 -----TTGAGCGCGTCATCGAAACCTACAACCTGATGTCG-AGCAAATTCTTCACCCACG 274680
Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979
| | ||||| ||||| || || || || || | | ||| || || ||||| ||
Sbjct 274679 CTTCTCCCACACTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCG 274620
Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039
| |||||||||| || || || ||||| ||||| ||||| |||||| ||||| | |
Sbjct 274619 TCGACATGAAGGAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGA 274560
Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099
|||||||| |||||| ||||| ||| | || || | || ||| | ||| |||
Sbjct 274559 TCTCCAAGATGGCCGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCT 274500
Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159
| | || ||||| ||||| || ||||| | || |||||||| || || || |||
Sbjct 274499 ATATTGCCGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACA 274440
Query 260160 ACACGGCGCGCTACGTCGACCAG 260182
|||| || |||||||||||||||
Sbjct 274439 ACACTGCTCGCTACGTCGACCAG 274417
>seq2328
Length=411296
Score = 140 bits (154), Expect = 5e-27
Identities = 215/303 (71%), Gaps = 13/303 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||| |||||||| || ||||||||||||||| | || |
Sbjct 57763 GATCTGGCAGATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 57705
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| | | | ||| || ||| | |||
Sbjct 57704 TGTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTC 57649
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| |||| |||||||||| || ||| || ||||||||| || ||||||| |||
Sbjct 57648 ATCTCGCACATCCTCGCCTTCTT-CGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGT 57590
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| | |||||||| |||| ||||| |||| || || || ||||| ||
Sbjct 57589 CGAGCGCTTCAGCGGCGAGGTCCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAAT 57530
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || ||||||||||| || ||||||||| | || |||||||||||| |||||||
Sbjct 57529 CATGATGGAGAACATCCACTCAGAGACCTACTCGTTGCTCATCGACACCTACATCAAGGA 57470
Query 1456068 CCC 1456070
||
Sbjct 57469 GCC 57467
Score = 107 bits (118), Expect = 3e-17
Identities = 119/156 (76%), Gaps = 7/156 (4%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCGACACTTTGCCGA 1456180
|| |||||||||||||| |||||||||||| | | ||| | |||| ||| ||| |
Sbjct 57353 AAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTCCTC----CTTCGCCCA 57298
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239
||| ||||| | ||| ||||| |||||||| ||||| ||| || ||| | ||||
Sbjct 57297 GCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 57238
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||| || || ||||| |||||
Sbjct 57237 CTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCT 57202
Score = 95.1 bits (104), Expect = 2e-13
Identities = 177/253 (70%), Gaps = 8/253 (3%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|| || ||||| || ||| |||||||| | ||||| | | |||| | ||||| | |||
Sbjct 57092 ATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCC--TTGCG 57035
Query 1456583 CTCA--TCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640
||| ||||||||||| ||| | || ||| |||||||||| | || ||||| |||||
Sbjct 57034 CTCTGCTCGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG-AGTTCGTCGCTGACCG 56977
Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700
|| | | || || ||| || ||| |||| | | |||| |||||| | |
Sbjct 56976 TCTCTTGGTTGCTCTTGGC-AATGACAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTA 56918
Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759
||||| ||||| || | |||||||||||||| || ||| || | || ||| |||
Sbjct 56917 TGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTACC 56858
Query 1456760 CCAAGGCCGGCGT 1456772
|||||||| ||
Sbjct 56857 AGAAGGCCGGTGT 56845
>seq2377
Length=307564
Score = 107 bits (118), Expect = 3e-17
Identities = 172/247 (70%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915
|||| ||||| || | | || |||||||| || || |||||| | |||||||| |
Sbjct 37127 CGTCGGTGAGCCGGGCGTACCGGAGGATGGCGCATCGCGACTGCAGCGGCTCGATGATCT 37186
Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975
| ||| ||||||||| | ||| || |||||||| |||| | | ||||| ||
Sbjct 37187 TGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATCGTTC 37246
Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035
||||| || || ||||| | | || | || ||||||||||||||| || | || ||
Sbjct 37247 GGCGGAGAGCTTGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGAATCACGAGCT 37306
Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCA 333095
||||||| || || ||||| ||| | ||| |||| ||||||| || || |
Sbjct 37307 TGTGGCGGCCCTGGGGCAGGGTGACCTTCTTCTGGGCGAAACCTTTGATGCGGTTACGGA 37366
Query 333096 CGACGTC 333102
|||||||
Sbjct 37367 CGACGTC 37373
>seq2640
Length=74610
Score = 87.8 bits (96), Expect = 3e-11
Identities = 108/143 (76%), Gaps = 5/143 (3%)
Strand=Plus/Plus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|||||| |||| || |||||||||||| |||| | ||||| ||| | || || | |||
Sbjct 53044 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGTGAGCTCGCCTCCGGCCTG 53103
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886
| | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| ||
Sbjct 53104 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 53162
Query 165887 CGT--GCG-CACTGCCGCCCAGC 165906
| | ||| | |||||||| |||
Sbjct 53163 CATTGGCGCCGCTGCCGCCAAGC 53185
>seq1813
Length=570218
Score = 86.0 bits (94), Expect = 9e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584
||||||| |||||||| ||| | || | ||||| |||||||||||| ||| | ||
Sbjct 33191 CATCGACACGGGCGCCGGTGTCATCGACGCTGACTACCGCGGCGAGGTTAAGGTCCTCCT 33132
Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644
|||||||| |||||||||||| || |||| | || | ||| |||||||| | |
Sbjct 33131 CTTCAACCACGCCGACGCCGACTTTGAGGTCGCCGAGGGTGACCGCGTCGCCCAGCTCGT 33072
Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704
||| || || | |||||| ||| ||||| || || || | || |||
Sbjct 33071 CGTCGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCGGAGCTCGAGGAGAGCGTGCG 33012
Query 334705 CGGCACCGGCGGCTTTGG 334722
|||| | |||||||| ||
Sbjct 33011 CGGCGCTGGCGGCTTCGG 32994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177531875477152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |