Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1255 122 8e-23
seq2064 113 4e-20
seq1448 105 6e-18
>seq1255
Length=235273
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || ||||| || | ||| |||||| || |||||||| ||||
Sbjct 166460 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 166401
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || |||||||| || || || |||| ||||||||||| | ||
Sbjct 166400 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 166341
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | |||||| || ||||||
Sbjct 166340 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 166281
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || |||||||| | || || || || ||||||||
Sbjct 166280 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 166234
>seq2064
Length=287033
Score = 113 bits (124), Expect = 4e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||||| || | ||| |||||| || |||||||| |||| |
Sbjct 186246 CCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 186187
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || ||||||||||| || || ||||| ||||||||||| | |||
Sbjct 186186 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 186127
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || |||||||||| ||||| ||||| |||| | | || ||| || || ||
Sbjct 186126 ATGCCCTCCTTGTCCTGAATCTTGGACTTCA-CGTTGTCGATGGTATCGGAGGACTCGAC 186068
Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712
||| | ||||| || || || ||
Sbjct 186067 CTCAAGGGTGATGGTCTTGCCGGT 186044
Score = 102 bits (112), Expect = 7e-17
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | ||||| || | ||| |||||| || |||||||| |||| |
Sbjct 185962 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 185903
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| || ||||||||||| || || ||||| ||||||||||| | |||
Sbjct 185902 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 185843
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660
| || |||||||||| ||||| |||||
Sbjct 185842 ATGCCCTCCTTGTCCTGAATCTTGGACTTCA 185812
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| ||||||||||| |||| || ||| || |||| || |||||||| || || ||
Sbjct 186438 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 186379
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| ||||||||||| | || | | |||||| || ||||| ||| | |||
Sbjct 186378 ATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTGA-CGTT 186320
Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||||| |||||| ||||| | || || || || || || | || || ||
Sbjct 186319 GTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAAC 186260
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 186259 GAAGATCTGCAT 186248
>seq1448
Length=227951
Score = 105 bits (116), Expect = 6e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | ||| || |||| || |||||||| || || || |
Sbjct 173020 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 172961
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||| | |||| || |||||||||| |||||| ||| | | |
Sbjct 172960 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 172901
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | |||||| || || ||||| | || || || |||||||||| || ||||| |
Sbjct 172900 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 172841
Query 35727 A 35727
|
Sbjct 172840 A 172840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450777281271680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |