Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1484 84.2 3e-11 >seq1484 Length=366709 Score = 84.2 bits (92), Expect = 3e-11 Identities = 295/461 (64%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 ||||| || || ||||||||||| ||||| | || || || | || | | || || Sbjct 274262 TTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCC 274321 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || || || ||||| | || || | | ||| | ||||| || || || Sbjct 274322 TTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGG 274381 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | ||||| ||||| || || ||||| || | ||| | |||||||| Sbjct 274382 TAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTG 274441 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || |||| | ||||| || | | ||| || || |||| || || || | |||||| Sbjct 274442 TTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAG 274501 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || | || || || | || ||||| || || || ||||| || ||||| Sbjct 274502 GAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATC 274561 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | || ||| || | ||||| || |||||||| || || || |||||| | Sbjct 274562 ATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACG 274621 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || || || |||| || || || || || || || | ||| ||||| ||| Sbjct 274622 AGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCG 274681 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 || ||||| |||| || | ||| ||||| ||||| || Sbjct 274682 TGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGAT 274722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686883933901440