Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1419 91.5 1e-13
>seq1419
Length=271755
Score = 91.5 bits (100), Expect = 1e-13
Identities = 191/282 (68%), Gaps = 11/282 (4%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||| | || ||||||||| | | || || | || |||||||| ||||| ||
Sbjct 252571 CCCAAGATTATCAACGGTCCTGAAGTGCTCAACAAGTTCGTCGGTCAATCCGAAGAGAAC 252512
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547
| ||| |||| || || || || |||| | | || | | |||| | | |||
Sbjct 252511 ATTCGAAAGATGTTCGCCGATGCAGA-GAAGGAGTACAAGGAGAAAGGCGACCAGAGTGG 252453
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607
| ||||| || || | ||||| ||||| || |||| ||||| |||||||||||||
Sbjct 252452 CCTTCACATCATCATCTTTGATGAGTTGGATGCCGTCTGCAAGCAGAGAGGTTCTGGTGC 252393
Query 19608 AAATGGA-GTAC--------ATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658
|||| |||| ||||| ||||||||| || || || | || | |||||
Sbjct 252392 TGGTGGAGGTACTGGCGTTGGTGACAGTGTTGTCAACCAGCTTCTTACCAAGCTCGACGG 252333
Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700
|||| | || || ||||| || || | || || ||||| ||
Sbjct 252332 TGTTGATCAGCTCAATAACATCTTGCTCATCGGTATGACCAA 252291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397441971790480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |