Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1419 91.5 1e-13 >seq1419 Length=271755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 191/282 (68%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || ||||||||| | | || || | || |||||||| ||||| || Sbjct 252571 CCCAAGATTATCAACGGTCCTGAAGTGCTCAACAAGTTCGTCGGTCAATCCGAAGAGAAC 252512 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| |||| || || || || |||| | | || | | |||| | | ||| Sbjct 252511 ATTCGAAAGATGTTCGCCGATGCAGA-GAAGGAGTACAAGGAGAAAGGCGACCAGAGTGG 252453 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGT 19607 | ||||| || || | ||||| ||||| || |||| ||||| ||||||||||||| Sbjct 252452 CCTTCACATCATCATCTTTGATGAGTTGGATGCCGTCTGCAAGCAGAGAGGTTCTGGTGC 252393 Query 19608 AAATGGA-GTAC--------ATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 |||| |||| ||||| ||||||||| || || || | || | ||||| Sbjct 252392 TGGTGGAGGTACTGGCGTTGGTGACAGTGTTGTCAACCAGCTTCTTACCAAGCTCGACGG 252333 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 |||| | || || ||||| || || | || || ||||| || Sbjct 252332 TGTTGATCAGCTCAATAACATCTTGCTCATCGGTATGACCAA 252291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397441971790480