Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 93.3 4e-14
seq1484 86.0 5e-12
>seq2064
Length=287033
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| |||| || | || | || | ||| || || || || || |||||||| |||
Sbjct 186702 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 186643
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| | || || | ||| || || ||| ||||||||||||| ||||| || ||
Sbjct 186642 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 186583
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||| || || ||||| || | | | || | ||||| | | || ||
Sbjct 186582 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 186523
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251
||||| || || | || || |||| ||| || || ||||| |||||| ||
Sbjct 186522 TCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATACCT 186472
>seq1484
Length=366709
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822
|| || |||||||| || || |||| ||| |||||| ||| | || |||||| |
Sbjct 273374 TGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCAC 273433
Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882
||||||||||| || || || | || | || || |||||| || || | |||||
Sbjct 273434 TCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAG 273493
Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942
|| || | ||||||| | |||| | |||||| | ||||| ||||| ||| |
Sbjct 273494 TTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCGAG 273553
Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCC 130980
|| |||||| |||||||| || | || || |||||
Sbjct 273554 GGCTTGACA---TTCCACATGTCGTACTGGAGGATGCC 273588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424919401940352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |