Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2328 113 1e-19 seq1484 105 2e-17 >seq2328 Length=411296 Score = 113 bits (124), Expect = 1e-19 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 443684 ACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTT 443743 ||||||| ||| ||||| | |||| || || || || || | ||||| || | || Sbjct 57319 ACGAGAAGTCCTC--CTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTT 57262 Query 443744 GTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTC 443803 || ||||| || || ||||||||||||||| | || |||||||| ||||||| |||| Sbjct 57261 CTTCAGCGGT-GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTC 57203 Query 443804 TGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTC 443863 ||||||| ||||| || ||| ||| || |||||| | || |||||| ||||| | Sbjct 57202 TGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCC 57143 Query 443864 TTCTCTAC 443871 | |||||| Sbjct 57142 TCCTCTAC 57135 >seq1484 Length=366709 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| ||||||| ||||||||| |||||||||||||| || || ||| ||||||| Sbjct 274461 CCCATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAACGC 274402 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 || || || ||| |||||||||| ||||| ||||||||||| Sbjct 274401 CCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGA 274361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588277064792720