Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq2328 113 1e-19
seq1484 105 2e-17
>seq2328
Length=411296
Score = 113 bits (124), Expect = 1e-19
Identities = 139/188 (74%), Gaps = 3/188 (2%)
Strand=Plus/Minus
Query 443684 ACGAGAAAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTT 443743
||||||| ||| ||||| | |||| || || || || || | ||||| || | ||
Sbjct 57319 ACGAGAAGTCCTC--CTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTT 57262
Query 443744 GTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTC 443803
|| ||||| || || ||||||||||||||| | || |||||||| ||||||| ||||
Sbjct 57261 CTTCAGCGGT-GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTC 57203
Query 443804 TGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTC 443863
||||||| ||||| || ||| ||| || |||||| | || |||||| ||||| |
Sbjct 57202 TGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCC 57143
Query 443864 TTCTCTAC 443871
| ||||||
Sbjct 57142 TCCTCTAC 57135
>seq1484
Length=366709
Score = 105 bits (116), Expect = 2e-17
Identities = 84/101 (83%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| ||||||| ||||||||| |||||||||||||| || || ||| |||||||
Sbjct 274461 CCCATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAACGC 274402
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081
|| || || ||| |||||||||| ||||| |||||||||||
Sbjct 274401 CCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGA 274361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588277064792720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |