Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1484 196 6e-45 seq2328 109 7e-19 >seq1484 Length=366709 Score = 196 bits (216), Expect = 6e-45 Identities = 1012/1587 (64%), Gaps = 53/1587 (3%) Strand=Plus/Plus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 ||||||||||| || || || ||||| ||| ||||| | | ||| |||||| Sbjct 273221 ATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTGG 273280 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| | | | ||| | | |||||| | | |||||| | ||| || | Sbjct 273281 ATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCATGTCG 273340 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||||| || | ||| |||||| | |||||||| || || | || | Sbjct 273341 ACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGC 273400 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 |||||||||| | ||||| || |||||||| || || || |||||||| || | |||| Sbjct 273401 TGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTG 273460 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 || || ||||| || || | | |||| ||| || | ||| | || |||||| | Sbjct 273461 CTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGATCTGC 273520 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACT 110882 ||||| | | | |||||||| || || | || || || || ||||||||| ||| Sbjct 273521 TCCTTCAAAGCGTCCCAGTCCCAG-AGATCCGAGGGCTTGACATT-CCACATGTCGTACT 273578 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | || || || |||| |||||||| | || | |||| || | | | | Sbjct 273579 GGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGG 273638 Query 110943 CCA-ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 ||| | ||| | | |||| ||||| || ||||| |||||||| || Sbjct 273639 CCAGCTGCACCG-ACATGGTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTT 273697 Query 111002 ATCTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCG 111056 | || || ||| || || | ||||| || | | | || |||| | Sbjct 273698 AGGTCGCGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCC-----AGGAAGGCATCAG 273752 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 | ||||| || ||||| | |||||| || | ||| ||||| || || || || || Sbjct 273753 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCT 273812 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 ||| || || || ||| |||| || ||| || || | ||||| || |||| Sbjct 273813 GAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGA 273872 Query 111177 TTTCATGAAGTTTTTCATAATC--AAAAGTGCGAG-TCTCTTCATTGACATACTTTGGAA 111233 || || || || | | || | | | | | | | ||| ||| | | || | Sbjct 273873 CCTCGTGGAGCTTCTGGAAGTCGTAGACGCCCTCGTTGTAGTCA---ACAAAGGTGGGCA 273929 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 ||||| || |||| ||||| || || |||||| | |||||| | || | Sbjct 273930 AGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCT 273989 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || || | |||||| || || || || | ||||| ||||| ||||| |||| Sbjct 273990 CCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGG 274049 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 |||||||||||||||||| | || | || ||||| ||||| | | ||| || || | Sbjct 274050 CGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCAT 274109 Query 111414 TCCA-AACATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTT 111469 ||| | | || | | || |||| ||| | || | ||| | ||||||||| Sbjct 274110 ACCAGAGCTTCTGGGCCT----TCATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTC 274165 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529 ||| | ||| || |||||||| || ||||| || || || || || || Sbjct 274166 TCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGGG 274225 Query 111530 CAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCC 111587 || | |||| ||| | || | ||| ||| |||| ||||||||| ||||| ||||||| Sbjct 274226 CACATGAGAGTCCA--GTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCC 274283 Query 111588 --ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 | || || |||| || || | ||| |||| || | || ||||| || | Sbjct 274284 AGAGAGCGAGGAAA--AGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAG 274341 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC--- 111702 || | ||| || | || ||| |||||||| |||||||| |||| |||| || || Sbjct 274342 ATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGG 274401 Query 111703 -CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 | || | | ||| | || | || ||||| || ||| ||| || || || ||||| | Sbjct 274402 GCGTTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGG 274460 Query 111762 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACAT 111821 | | | ||| | || ||| || || || |||| || |||| | | Sbjct 274461 GGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGC 274520 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAG 111879 ||| | || | ||||| || || ||| ||| ||||| | ||||| | | | | || Sbjct 274521 GATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA-AGT-CTTGAG 274578 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 || | |||||||| | || ||||||||||| || ||| ||||||||| ||||| Sbjct 274579 GGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAG 274638 Query 111940 CTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACC 111996 ||| || || || |||||||| |||||||| || || | ||||| |||| | | | Sbjct 274639 CTG-GGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGC 274697 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | |||||| || ||| || || | ||| |||| ||| || || ||| || | Sbjct 274698 T--CGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAAC 274755 Query 112057 TGCGACCCGCATGAACATGTACTGTGG 112083 ||||| ||||||| ||||| ||| || Sbjct 274756 GGCGACACGCATGATCATGTGCTGGGG 274782 >seq2328 Length=411296 Score = 109 bits (120), Expect = 7e-19 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||||||||||||||| || || || || || || |||||| ||||| Sbjct 57147 GGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 57206 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| ||||| |||||||| | ||| | || | | ||| | ||| ||||||||| Sbjct 57207 AGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGAT 57266 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 |||||| || || || |||| ||||| | |||||||||| ||||| | || Sbjct 57267 ACCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGAG---GACTTCTCGTCGCT 57323 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTT 122864 | ||| |||| ||||| | |||||||| Sbjct 57324 GATCCACTTCAGAGCCCAGTCGGCCTTCTT 57353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628009265241600