Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 268 1e-66
seq2328 138 1e-27
>seq1484
Length=366709
Score = 268 bits (296), Expect = 1e-66
Identities = 1060/1648 (64%), Gaps = 41/1648 (2%)
Strand=Plus/Plus
Query 117998 GATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 118057
||||||||| |||||| |||| ||| ||| | ||| ||||| | ||| || ||
Sbjct 273220 GATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTG 273279
Query 118058 GATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAAT 118114
||| || ||| || | | |||| | | |||||| | | ||||| | ||| ||
Sbjct 273280 GATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCAT 273336
Query 118115 CTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 118174
| || |||| || ||| ||||| || |||||||| || || ||
Sbjct 273337 GTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACG 273396
Query 118175 TCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 118234
|| | | ||||| |||| ||||| |||||||||||||| ||||| |||||||| || |
Sbjct 273397 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGA 273456
Query 118235 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAAT 118294
||| || || |||||||| || | |||||| ||| |||| ||| | | | | ||
Sbjct 273457 GGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT 273516
Query 118295 GCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAA 118354
| ||||| | |||||||||||| || | | || | | |||||| || |
Sbjct 273517 CTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTA 273576
Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414
||||||||| || || || | || || ||||| | |||| || |||||||| |||
Sbjct 273577 CTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTT 273636
Query 118415 CGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGC 118471
|||| | | || | | |||||| ||||| || || || ||||| ||
Sbjct 273637 GGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTT 273693
Query 118472 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCG 118530
|| | | ||||| || || || | | | ||| | | || |||| |
Sbjct 273694 GTTTAGGTCGCGAGCCTCAGGAGACTCGAA-GGGCATGCGCAGAGCCAGGAAGGCATCAG 273752
Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590
| ||||| ||||||||||| ||||| ||||| || | ||| || || ||||| ||
Sbjct 273753 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCT 273812
Query 118591 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650
|| || || || ||||| | || || || || | ||||||| ||||
Sbjct 273813 GAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGA 273872
Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---ACATACTTAGGAA 118707
|| || ||||| | | | || | || ||| | | | ||| | | || |
Sbjct 273873 CCTCGTGGAGCTTCTGGAAGTCGTAGACGC---CCTCGTTGTAGTCAACAAAGGTGGGCA 273929
Query 118708 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 118767
||||| || ||||| || || || | | |||||| | |||||| || || |
Sbjct 273930 AGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCT 273989
Query 118768 CCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827
||||||| | ||| || || |||||||| | |||||| || || ||| |||
Sbjct 273990 CCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGG 274049
Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887
||||||||||| |||||| | || | || ||||| || |||| || ||| || || |
Sbjct 274050 CGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCAT 274109
Query 118888 TCCAGA-CATCGGCAGCTGGCACAGTGGCGTTG----GCTCGCCCCTCTTCCTCGTACTT 118942
||||| | || | || || ||| ||| || |||| || | |||||||||
Sbjct 274110 ACCAGAGCTTCTG-GGCCTTCA---TGGTCTTGCGACCCTTGCCCATC-TGCTCGTACTT 274164
Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002
||| | ||| || ||||| || || | || | || || || || | ||
Sbjct 274165 CTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGG 274224
Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062
||| | ||||| ||| | || || ||| |||| ||||||||||||||| || |||||
Sbjct 274225 GCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCA 274284
Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122
||| || ||| || || || ||| | || || | || || || |||| ||
Sbjct 274285 GAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATC 274344
Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC---CT 119178
||| ||||| | || ||| |||||||| || || ||||| | |||| | |||| |
Sbjct 274345 CAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCG 274404
Query 119179 TACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238
| | | ||| |||||| || || | |||||| ||| || ||||| ||||| || |
Sbjct 274405 TTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGA 274463
Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGT 119298
|| ||| | || || || || || |||| || |||| | || |
Sbjct 274464 CGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGAT 274523
Query 119299 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 119358
| | || | |||||| || || ||| ||| ||||| ||||| | |||| ||
Sbjct 274524 GAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGT 274583
Query 119359 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAG 119418
||||||| || || || ||||| |||| | ||| ||||||||| |||| || |
Sbjct 274584 CGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-G 274642
Query 119419 GCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA--TACCTTGGG 119475
||||| || ||||||||||||||||| || || | |||||| |||| | | || |
Sbjct 274643 GCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCT--CG 274700
Query 119476 ACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 119535
||||| || |||||| || | |||| || ||| || || ||||| | | ||
Sbjct 274701 ACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGA 274760
Query 119536 CCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAAC 119595
| ||||| | ||||| |||||| | || | | || || ||| | |||||||
Sbjct 274761 CACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATG 274820
Query 119596 TCTTCTCCAAGGTCTTGAGACCAAAATA 119623
||||||||||||||| || |||||
Sbjct 274821 ATCTCTCCAAGGTCTTGAAGCCGAAATA 274848
>seq2328
Length=411296
Score = 138 bits (152), Expect = 1e-27
Identities = 346/519 (67%), Gaps = 14/519 (3%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| |||||||| |||||||| ||||| ||| ||| ||| |||||||||
Sbjct 56860 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATA 56919
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| || || || || || || | | || || | |||| | ||||||
Sbjct 56920 AAGTCGAACGGATTGGAAGACTTGTAGACCT-TGTCATTGCCAAGAGCAACCAAGAGACG 56978
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||||||||||| |||| | ||||||||| |||| || ||
Sbjct 56979 GTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGCA 57038
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| ||| ||| || | ||||| || | ||| | |
Sbjct 57039 AGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGTCCTC 57098
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|||| || | ||| || | | ||| | || | || ||| || |||||| ||
Sbjct 57099 AATGACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAGG--CA-GGCAAAGTC 57155
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
|||||||||||| ||||| |||||||| || || |||||| |||||| ||||| ||
Sbjct 57156 GGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAG 57215
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | || | || ||||||||| ||||| ||
Sbjct 57216 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGAC 57275
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200
||||| |||| ||| |||| || ||||| |||||| || | ||||||
Sbjct 57276 GGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGA---GGACTTCTCGTCGCTGATCCACTT 57332
Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239
|| ||||| | ||||| || ||| || || || ||
Sbjct 57333 CAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 57371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618412812645760
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