Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1484 268 1e-66 seq2328 138 1e-27 >seq1484 Length=366709 Score = 268 bits (296), Expect = 1e-66 Identities = 1060/1648 (64%), Gaps = 41/1648 (2%) Strand=Plus/Plus Query 117998 GATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 118057 ||||||||| |||||| |||| ||| ||| | ||| ||||| | ||| || || Sbjct 273220 GATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTG 273279 Query 118058 GATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAAT 118114 ||| || ||| || | | |||| | | |||||| | | ||||| | ||| || Sbjct 273280 GATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCAT 273336 Query 118115 CTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 118174 | || |||| || ||| ||||| || |||||||| || || || Sbjct 273337 GTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACG 273396 Query 118175 TCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 118234 || | | ||||| |||| ||||| |||||||||||||| ||||| |||||||| || | Sbjct 273397 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGA 273456 Query 118235 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAAT 118294 ||| || || |||||||| || | |||||| ||| |||| ||| | | | | || Sbjct 273457 GGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT 273516 Query 118295 GCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAA 118354 | ||||| | |||||||||||| || | | || | | |||||| || | Sbjct 273517 CTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTA 273576 Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414 ||||||||| || || || | || || ||||| | |||| || |||||||| ||| Sbjct 273577 CTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTT 273636 Query 118415 CGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGC 118471 |||| | | || | | |||||| ||||| || || || ||||| || Sbjct 273637 GGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTT 273693 Query 118472 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCG 118530 || | | ||||| || || || | | | ||| | | || |||| | Sbjct 273694 GTTTAGGTCGCGAGCCTCAGGAGACTCGAA-GGGCATGCGCAGAGCCAGGAAGGCATCAG 273752 Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590 | ||||| ||||||||||| ||||| ||||| || | ||| || || ||||| || Sbjct 273753 CAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGAGCCTCCT 273812 Query 118591 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 || || || || ||||| | || || || || | ||||||| |||| Sbjct 273813 GAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACCTGGGTGA 273872 Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---ACATACTTAGGAA 118707 || || ||||| | | | || | || ||| | | | ||| | | || | Sbjct 273873 CCTCGTGGAGCTTCTGGAAGTCGTAGACGC---CCTCGTTGTAGTCAACAAAGGTGGGCA 273929 Query 118708 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 118767 ||||| || ||||| || || || | | |||||| | |||||| || || | Sbjct 273930 AGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCGATGATCT 273989 Query 118768 CCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827 ||||||| | ||| || || |||||||| | |||||| || || ||| ||| Sbjct 273990 CCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGG 274049 Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887 ||||||||||| |||||| | || | || ||||| || |||| || ||| || || | Sbjct 274050 CGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCAT 274109 Query 118888 TCCAGA-CATCGGCAGCTGGCACAGTGGCGTTG----GCTCGCCCCTCTTCCTCGTACTT 118942 ||||| | || | || || ||| ||| || |||| || | ||||||||| Sbjct 274110 ACCAGAGCTTCTG-GGCCTTCA---TGGTCTTGCGACCCTTGCCCATC-TGCTCGTACTT 274164 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 ||| | ||| || ||||| || || | || | || || || || | || Sbjct 274165 CTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCACTCGTTGGG 274224 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 ||| | ||||| ||| | || || ||| |||| ||||||||||||||| || ||||| Sbjct 274225 GCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCGGGAATCCA 274284 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 ||| || ||| || || || ||| | || || | || || || |||| || Sbjct 274285 GAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGATC 274344 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACCC---CT 119178 ||| ||||| | || ||| |||||||| || || ||||| | |||| | |||| | Sbjct 274345 CAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCG 274404 Query 119179 TACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | | | ||| |||||| || || | |||||| ||| || ||||| ||||| || | Sbjct 274405 TTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGCATGGGGA 274463 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGT 119298 || ||| | || || || || || |||| || |||| | || | Sbjct 274464 CGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGGATGCGAT 274523 Query 119299 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 119358 | | || | |||||| || || ||| ||| ||||| ||||| | |||| || Sbjct 274524 GAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTGAGGGTGT 274583 Query 119359 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAG 119418 ||||||| || || || ||||| |||| | ||| ||||||||| |||| || | Sbjct 274584 CGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGACAGCTG-G 274642 Query 119419 GCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA--TACCTTGGG 119475 ||||| || ||||||||||||||||| || || | |||||| |||| | | || | Sbjct 274643 GCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTTGCT--CG 274700 Query 119476 ACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 119535 ||||| || |||||| || | |||| || ||| || || ||||| | | || Sbjct 274701 ACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCAACGGCGA 274760 Query 119536 CCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAAC 119595 | ||||| | ||||| |||||| | || | | || || ||| | ||||||| Sbjct 274761 CACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATG 274820 Query 119596 TCTTCTCCAAGGTCTTGAGACCAAAATA 119623 ||||||||||||||| || ||||| Sbjct 274821 ATCTCTCCAAGGTCTTGAAGCCGAAATA 274848 >seq2328 Length=411296 Score = 138 bits (152), Expect = 1e-27 Identities = 346/519 (67%), Gaps = 14/519 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| |||||||| |||||||| ||||| ||| ||| ||| ||||||||| Sbjct 56860 TAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATA 56919 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || || || || || || || | | || || | |||| | |||||| Sbjct 56920 AAGTCGAACGGATTGGAAGACTTGTAGACCT-TGTCATTGCCAAGAGCAACCAAGAGACG 56978 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||||| |||| | ||||||||| |||| || || Sbjct 56979 GTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGCA 57038 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||| ||| || | ||||| || | ||| | | Sbjct 57039 AGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCATCGACAATAATGTCCTC 57098 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 |||| || | ||| || | | ||| | || | || ||| || |||||| || Sbjct 57099 AATGACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTAGAGGAGG--CA-GGCAAAGTC 57155 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||||||||| ||||| |||||||| || || |||||| |||||| ||||| || Sbjct 57156 GGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAG 57215 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | || ||||||||| ||||| || Sbjct 57216 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGAC 57275 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---AAACCACTT 130200 ||||| |||| ||| |||| || ||||| |||||| || | |||||| Sbjct 57276 GGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGA---GGACTTCTCGTCGCTGATCCACTT 57332 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 || ||||| | ||||| || ||| || || || || Sbjct 57333 CAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 57371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618412812645760