Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 129 2e-24
seq1255 120 9e-22
seq2328 104 7e-17
>seq2064
Length=287033
Score = 129 bits (142), Expect = 2e-24
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | || ||||| ||||| || ||||| || || || || ||
Sbjct 186709 TTACTGACCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTA 186650
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
||| || || || ||||| || | || || ||||| || || ||||| ||||||||
Sbjct 186649 GTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATC 186590
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
|||||||| || || || |||||||| || | || || || ||||||| || || |
Sbjct 186589 GGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGA 186530
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || ||||| | ||||||||||| | || || || || ||||||||
Sbjct 186529 CTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 186476
Score = 114 bits (126), Expect = 4e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| | ||||| |||||||| || || || || |
Sbjct 185970 TTTGCATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGT 185911
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || ||||| || || ||||| ||||| | || ||||| |
Sbjct 185910 AGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGT 185851
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || |||||||| || | || || || || || | ||| || |
Sbjct 185850 CGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGG 185791
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || ||||| |||| ||||| |||||
Sbjct 185790 ACTCGACCTCAAGGGTAATGGTCTTGCCGGT 185760
Score = 102 bits (112), Expect = 2e-16
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || |||||||| || || || || || ||
Sbjct 186250 CATACCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 186191
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || ||||| ||||| | || ||||| || ||
Sbjct 186190 GGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGG 186131
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || |||||||| || | || || || || || | ||| || | ||
Sbjct 186130 GGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTC 186071
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| ||||| || | ||||| ||||| || || || ||
Sbjct 186070 GACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 186032
>seq1255
Length=235273
Score = 120 bits (132), Expect = 9e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | |||||||||||||| || || || || || ||
Sbjct 166464 CATACCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 166405
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || |||||||| ||||| || || ||||| |||||
Sbjct 166404 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGG 166345
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || ||||| || || | || || | ||
Sbjct 166344 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTC 166285
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || || ||||||||
Sbjct 166284 CACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 166234
>seq2328
Length=411296
Score = 104 bits (114), Expect = 7e-17
Identities = 102/131 (78%), Gaps = 3/131 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || |||||| | || || ||| || || | ||||||||| || ||||| |||||
Sbjct 380681 CGAGGGACACCAAGCGTGACGTTC---TTGGACGAAACACCAGCGAAATGGAAGGTATTC 380737
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| |||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct 380738 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATAACACCGACCATCTCG 380797
Query 377578 CCAGGATTGAC 377588
|||||| ||||
Sbjct 380798 CCAGGACTGAC 380808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515198176485488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |