Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1484 320 2e-82 seq1257 136 4e-27 seq2328 111 2e-19 >seq1484 Length=366709 Score = 320 bits (354), Expect = 2e-82 Identities = 538/770 (70%), Gaps = 24/770 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | |||||| ||||||||| ||| ||| || || ||| Sbjct 274769 TCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGCGCGTCATCGAAACCTACA 274710 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| || | ||| || ||||| | || || || ||||||||||||| Sbjct 274709 ACCTGATGTCGAGCAAA---TTCTTCACCCACGCTTCTCCCACACTCTTCAACGCTGGTA 274653 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | ||| | ||| |||| |||||||| || | |||||||| ||||| || || | Sbjct 274652 CCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAGGAGGACTCTATTGAGG 274593 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| || |||||| || ||| ||||||||| | | ||||| || ||| Sbjct 274592 GTATCTACGACACCCTCAAGACTTGCGCCATGATCTCCAAGATGGCCGGTGGCATTGGTC 274533 Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 || || | || | || ||||||| | |||| | || || || ||||| | | Sbjct 274532 TCAAC-GTTC-ATCGCATCCGTGCCACCGGCTCCTATATTGCCGGCACTAACGGTACCTC 274475 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || |||| || |||||||| |||||||||||||| || || |||||| ||||||| Sbjct 274474 GAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGG 274415 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| || ||| ||| | |||||||||||||| ||||| ||||||||||| | | Sbjct 274414 TGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGATGTCTT 274355 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 || || | || ||||| ||| || || | || ||| | || ||||||||| || Sbjct 274354 CGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGTGACCTTTT 274295 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||||| |||||||| |||||||||||| | | ||| |||||| ||| ||| ||| Sbjct 274294 CCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGAAGAACGGGGACTGGAC 274235 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || |||||||| ||||||||||| ||||| | | || |||||| |||||||| | | Sbjct 274234 TCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTG-CTACGGCGAGGAGTTCGAGG 274176 Query 53787 AGATGTATCGGACGTAC--GCAGTT----CAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 |||| || |||| |||| | |||| ||| |||| | ||||| | Sbjct 274175 CCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGC------AAGACCATGAAGGCCC 274122 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| |||||| || |||| ||||| || | || | |||| || Sbjct 274121 AGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCTTTCATGCTCT 274062 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 |||||||| | | |||| |||||||||||||||||| | ||| |||| Sbjct 274061 ACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATC 274012 Score = 116 bits (128), Expect = 4e-21 Identities = 546/850 (64%), Gaps = 34/850 (4%) Strand=Plus/Minus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| || || | ||||| || ||||||||| | ||||| Sbjct 273894 GACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCATC 273835 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| || ||||||| | | | ||| ||||| |||| | || ||||| ||||| Sbjct 273834 GACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATGCGTCACCGCCCCATT 273775 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | ||||||| ||||| | || || |||| || || | |||||||||| || Sbjct 273774 GGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTGCGCATGCCCTTCGAGTCT 273715 Query 55277 GAACCTG---CTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCT 55332 |||| |||| || | ||| || | ||||| || | ||||||| || || || Sbjct 273714 ---CCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGAC-CATCTACCACGCTGCCCT 273659 Query 55333 CGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCC 55392 | |||| || ||||| | | ||||| ||||| |||||| | | ||| || Sbjct 273658 CACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTTCCCC 273599 Query 55393 AG-CTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG- 55444 | || || || | | ||||||| ||| | ||| | |||| || || | | | Sbjct 273598 CGTCTCTCAGGGCA-TCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCTGGG 273540 Query 55445 --TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGG 55502 | ||| |||||| | | || | | || | |||||||| || ||||| | Sbjct 273539 ACTGGGACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCG 273480 Query 55503 CGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGT 55562 |||| ||||| || || || | |||||| |||||||||||||| || ||||| | Sbjct 273479 CGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCT 273420 Query 55563 ACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGC 55622 |||| |||||||||||| ||| || || || |||||||| | ||||| Sbjct 273419 ACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAACCCTT 273360 Query 55623 ACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAGA--CGGAT 55678 ||| | |||||||| | || |||| ||| | || |||| || || Sbjct 273359 GGCTCTTGAAGGACCTTGTCGACATGGGTTTGTGG--TCCGATGCCATGAAGAACCGCAT 273302 Query 55679 -ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCT-CTGCGTCTCAAGG 55733 |||| |||| || || ||||||| | | || ||| ||| | |||||| Sbjct 273301 CATTGCCGAGAAC---GGTTCGATCCAGAACATCCCCAACATCCCTACTGAG-GTCAAGG 273246 Query 55734 AGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATC 55793 | ||| ||| || ||||| || | ||| | | | | ||| ||| || | Sbjct 273245 CCCTGTACAAGACTGTTTGGGAAATCTCTCAGCGTACCGTCGTGCAGATGGCTGCCGACC 273186 Query 55794 GTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGG 55853 ||||||| | ||| |||||||| ||||| || ||||| |||| || | || | ||| Sbjct 273185 GTGGTGCCTTCATTGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGG 273126 Query 55854 CCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACT 55913 ||| | | | |||||||| ||| |||||| || || |||||||| ||||||| Sbjct 273125 GCAAAATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTGAAGACGGGCATGTACT 273066 Query 55914 ATCTGCGGAC 55923 | ||||| || Sbjct 273065 ACCTGCGCAC 273056 >seq1257 Length=129671 Score = 136 bits (150), Expect = 4e-27 Identities = 204/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | ||||| |||||| ||||| || || || | || || | ||| || Sbjct 118339 ATGTAACGAGGACTGGCAGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGAT 118280 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| ||| ||||| ||||| | ||||||||| ||||| || | | | || || Sbjct 118279 GGCTCCAGGCAGTTGATATTGTTAGAGCCCACGAAGTTCTGCGCAAGACCAATGATGGTC 118220 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||| ||| ||||||||||||| || | ||||||||| | ||||| || ||||| Sbjct 118219 TGCTGGAGAGAGACTTCACCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAAT 118160 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | | |||||| |||| | || ||| |||||| ||||||||| || ||||| ||| Sbjct 118159 TCGACGACCTTCTGGTCCTTGACCAAGTTTCTCTTGAAACAGGCGTAGATAACCTTACGC 118100 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || || ||||| || || || ||| ||| || || ||| || |||| Sbjct 118099 TGACCGGGCTTCAATCCATCGACGACGGAAGGGATGGATCGCATGTTGTC 118050 Score = 122 bits (134), Expect = 1e-22 Identities = 204/293 (70%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| || ||||||||| ||||| |||||||| | |||||| | ||| Sbjct 118340 AATGTAACGAGGACTGGCAGCATCCGAACCACCGGCAAGACGAGAACCGAAGTTTCCGGA 118281 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 ||||||| | ||| | ||||| | |||||| ||||| || || | | || || Sbjct 118280 TGGCTCCAGGCAGTTGATATTGTTAGAGCCCACGAAGTTCTGCGCAAGACCAATGATGGT 118221 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 ||||| | ||||| ||||| || | ||||||||| | | ||| || |||| Sbjct 118220 CTGCTGGAGAGAGACTTCACCGTGGTGGTAGGACGTCTGCTCGGAAATGTAACCGGCCAA 118161 Query 117490 CTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547 | | |||||| ||| |||| || ||| |||||| ||||| || || ||||| Sbjct 118160 TTCGACGACCTTCTGGTCCTTGAC--CAAGTTTCTCTTGAAACAGGCGTAGATAACCTTA 118103 Query 117548 CGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||||||| ||||||| ||||| | ||| |||||| || ||| || |||| Sbjct 118102 CGCTGACCGGGCTTCAATCCATCGACGACGGAAGGGATGGATCGCATGTTGTC 118050 >seq2328 Length=411296 Score = 111 bits (122), Expect = 2e-19 Identities = 299/448 (67%), Gaps = 22/448 (5%) Strand=Plus/Plus Query 74472 ACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAA 74531 || ||||| ||||| ||||||||||| || ||| |||||||||||||| ||||||| Sbjct 56869 ACACGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGAGAGATGTTCTCCATAAAGTCGAAC 56928 Query 74532 GGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGGCGATCCGCC 74588 || || | ||| | ||| || |||| ||| ||| || || || Sbjct 56929 GGATTGGAAGACTTGTAGAC---CTTGTCATTGCCAAGAGCAACCAAGAGACGGTCAGCG 56985 Query 74589 ACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGT 74648 || || | |||||||||| |||| | | |||||||| || ||| ||||| Sbjct 56986 ACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCGAGCAGAGCGCAAGGCAGA 57045 Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGTG---AATG 74705 |||||||| | ||||| ||| | || | ||| | |||||| ||| |||| Sbjct 57046 GCCTCGGTCAGGAACTCCTGCTCGATCTTGACAGCA---TCGACAATAATGTCCTCAATG 57102 Query 74706 TCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTG 74761 | | || |||| || | | ||||||||||| || | || |||||| || Sbjct 57103 ACCTGCTTGCTGGGGCGGTTCT---TGAGGTGAGAGTAGAGGAGGCA-GGCAAAGTCGGT 57158 Query 74762 ATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTC 74820 || ||| || ||||| | || | || || || || | || ||||||||||| | Sbjct 57159 GTG-GAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATAAGAC 57217 Query 74821 CACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACAC 74880 |||||||||| | ||| ||||||| ||||| ||| ||||||||||| || ||||| Sbjct 57218 CACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGG 57277 Query 74881 ACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 || ||||| || ||||| || ||||| Sbjct 57278 CGGCGAAGGCAACGAGGCGCTGGGCGAA 57305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196190780800