Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1484 399 2e-106
seq2064 167 3e-36
seq1255 167 3e-36
seq1448 114 1e-20
>seq1484
Length=366709
Score = 399 bits (442), Expect = 2e-106
Identities = 962/1433 (67%), Gaps = 52/1433 (4%)
Strand=Plus/Plus
Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415
||||| || || || || ||| | || | ||| | ||||| |||||||| ||||
Sbjct 273377 AACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCG 273436
Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475
||||| || | |||||| | ||||| || |||||||| || |||| | || || ||
Sbjct 273437 TTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTG 273496
Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCA---ACCCCAACG 80532
|| | ||||||| |||||| | ||| |||| | | || | || | || | |
Sbjct 273497 CGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGC-GTCCCAGTCCCAGAGATCCGAGGG 273555
Query 80533 CTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACG 80590
|| |||| ||||||||||| ||| | |||||||| || | || || ||| || |||
Sbjct 273556 CT-TGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACG 273614
Query 80591 TCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGACTCCATAAGGGCCGCGTGATAA 80649
||| ||| ||||||||| ||||||||||| ||| |||| | ||||| ||||| ||
Sbjct 273615 TCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCAC-CGACATGGTGAGGGCAGCGTGGTAG 273673
Query 80650 ATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCC 80709
||| |||||||| |||||| | |||| |||| || ||||| | || || |
Sbjct 273674 ATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACTCGAAGGGCATGCGC 273733
Query 80710 ATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTG 80769
| || ||| | ||||| || ||||| || |||| | || |||||||| ||| ||
Sbjct 273734 AGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATG 273793
Query 80770 TT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828
|| | | || |||||| ||| ||||| ||| ||||||| | |||||||||
Sbjct 273794 TTGCTGTTGC-GAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTT 273852
Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA------TTGGTTCCC 80882
||| ||||||| | || || || || || ||||| |||||| | | |||
Sbjct 273853 GCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACGCCCTCGTTGTA 273912
Query 80883 CTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941
| ||||| | || ||||| || || ||||| ||||| || || ||||| ||||
Sbjct 273913 GTCAACAAAGGTGGGCAAGGC-GAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCG 273971
Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001
| |||||| ||| |||||||| | || || || || || ||||| ||||
Sbjct 273972 CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCT 274031
Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061
|||| |||| |||| || ||||||||| |||| | ||| | || |||||| ||
Sbjct 274032 GGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCT 274091
Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTG-CCT 81120
| | || ||||||||| | ||| | || | ||||| | |||||| ||| ||
Sbjct 274092 GGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCA 274151
Query 81121 TCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTC 81179
|| | | | ||||| |||| | ||||||| | |||| | || || | ||| |
Sbjct 274152 TCTG-CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAG-TCGGCCAGGCC 274209
Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239
||||||||||| |||||||| || |||||| || |||||||| |||||||||
Sbjct 274210 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAA 274269
Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTG 81299
||| || |||||||| ||| ||| ||||| ||| || ||||||| | || ||
Sbjct 274270 GAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTG 274329
Query 81300 GTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC 81359
||| ||||| || | ||||| | || || || ||||| ||||| || || | |||
Sbjct 274330 GTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGC 274389
Query 81360 GATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATAC 81416
|| | ||| ||| ||||||||||| |||||| || ||||| ||| || ||
Sbjct 274390 GAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 274449
Query 81417 ACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTT 81476
||| | ||| |||| || ||| | || |||||| || || | ||| || || |
Sbjct 274450 ACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGT 274509
Query 81477 GGCGCGCACCTTGC--TGA---TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGA 81531
||| || | ||| ||| ||| ||||| |||||||| | | ||| || |||
Sbjct 274510 GGCACGGA---TGCGATGAACGTTG--AGACCAATGCCACCGGCCATCTTGGAGATCATG 274564
Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC------- 81584
|| || || | ||| || || || ||||| || || | ||||||||
Sbjct 274565 GCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGG 274624
Query 81585 AAGCAAGA-AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGG 81643
|||||||| |||||| | | ||||||| | || || ||||| ||||| || |
Sbjct 274625 AAGCAAGAGGACAGCTGGGC--CTGAGGG------GTACCAGCGTTGAAGAGTGTGGGAG 274676
Query 81644 TCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATAT 81703
||||| |||| | | | |||||||||| |||||||| ||||||| || |
Sbjct 274677 AAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGT 274736
Query 81704 CGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756
||||||| ||||| | || |||||||| | ||||| |||||| |||||
Sbjct 274737 CGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCG 274789
>seq2064
Length=287033
Score = 167 bits (184), Expect = 3e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
||||||||||||||||||||||| || || |||||||| ||||| |||| ||| |
Sbjct 186032 GTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGAC 186091
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| ||||| | || ||||||||||||||||| ||||| || ||||||||||| | ||
Sbjct 186092 AACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATC 186151
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| ||||||||||| || ||||| | || ||||| | ||||| || |||| |||||
Sbjct 186152 TTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAG 186211
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || | || ||||||| || |||||
Sbjct 186212 TCTACCCTCCACTTGGTGCTGCGTCTCCGTGGTGG 186246
Score = 154 bits (170), Expect = 2e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||| ||||| || || || ||||| |||||
Sbjct 186476 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 186535
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || ||||||||||||||||| |||||||| || |||
Sbjct 186536 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 186595
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||| ||||| ||||| | ||||||| || ||| | ||||| ||
Sbjct 186596 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 186655
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || || ||||| || ||| | ||||| || || || ||
Sbjct 186656 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGGTCA 186705
Score = 150 bits (166), Expect = 2e-31
Identities = 155/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| ||||| |||||||| ||||| |||| ||| | || ||||| |
Sbjct 185760 ACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGTCC 185819
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| ||||| || ||||||||||| | || || |||||||||
Sbjct 185820 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTAAG 185879
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||| | || ||||| | ||||| || |||| ||||| || || |||||
Sbjct 185880 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 185939
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | || ||||| |||||
Sbjct 185940 TTGGTTCTCCGCCTTCGTGGTGG 185962
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||||||||| |||||||| || ||
Sbjct 186248 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 186307
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || ||||| || |||||||| || || || ||||||
Sbjct 186308 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 186367
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || ||||| ||||| || ||||| | || ||||| | ||||| ||
Sbjct 186368 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 186427
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||||| ||||| ||||| ||| | || || ||||| ||
Sbjct 186428 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGG 186474
>seq1255
Length=235273
Score = 167 bits (184), Expect = 3e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || || || |||||||| || |||||||| |||||
Sbjct 166231 ATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 166290
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 166291 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 166350
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| || || || ||||| ||||| |||||||| | || ||||| | |||||
Sbjct 166351 CAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 166410
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| || |||||||| | ||| |||| || || |||||
Sbjct 166411 AACATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCGCCTCCGTGGTGG 166460
>seq1448
Length=227951
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 172840 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 172899
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| |
Sbjct 172900 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 172959
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || || || ||||| |||||||| | || ||||| | ||||| || |||| |||
Sbjct 172960 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 173019
Query 27595 G 27595
|
Sbjct 173020 G 173020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570289754763520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |