Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1484 399 2e-106 seq2064 167 3e-36 seq1255 167 3e-36 seq1448 114 1e-20 >seq1484 Length=366709 Score = 399 bits (442), Expect = 2e-106 Identities = 962/1433 (67%), Gaps = 52/1433 (4%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || || || ||| | || | ||| | ||||| |||||||| |||| Sbjct 273377 AACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCG 273436 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || | |||||| | ||||| || |||||||| || |||| | || || || Sbjct 273437 TTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTG 273496 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCA---ACCCCAACG 80532 || | ||||||| |||||| | ||| |||| | | || | || | || | | Sbjct 273497 CGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGC-GTCCCAGTCCCAGAGATCCGAGGG 273555 Query 80533 CTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACG 80590 || |||| ||||||||||| ||| | |||||||| || | || || ||| || ||| Sbjct 273556 CT-TGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACG 273614 Query 80591 TCTCGTACGGGCCCTCCGTCTTGGCCAGCT-CACACGACTCCATAAGGGCCGCGTGATAA 80649 ||| ||| ||||||||| ||||||||||| ||| |||| | ||||| ||||| || Sbjct 273615 TCTGGTAGGGGCCCTCCTCCTTGGCCAGCTGCAC-CGACATGGTGAGGGCAGCGTGGTAG 273673 Query 80650 ATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCC 80709 ||| |||||||| |||||| | |||| |||| || ||||| | || || | Sbjct 273674 ATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACTCGAAGGGCATGCGC 273733 Query 80710 ATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTG 80769 | || ||| | ||||| || ||||| || |||| | || |||||||| ||| || Sbjct 273734 AGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATG 273793 Query 80770 TT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828 || | | || |||||| ||| ||||| ||| ||||||| | ||||||||| Sbjct 273794 TTGCTGTTGC-GAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTT 273852 Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA------TTGGTTCCC 80882 ||| ||||||| | || || || || || ||||| |||||| | | ||| Sbjct 273853 GCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACGCCCTCGTTGTA 273912 Query 80883 CTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 | ||||| | || ||||| || || ||||| ||||| || || ||||| |||| Sbjct 273913 GTCAACAAAGGTGGGCAAGGC-GAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCG 273971 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001 | |||||| ||| |||||||| | || || || || || ||||| |||| Sbjct 273972 CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCT 274031 Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061 |||| |||| |||| || ||||||||| |||| | ||| | || |||||| || Sbjct 274032 GGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCT 274091 Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTG-CCT 81120 | | || ||||||||| | ||| | || | ||||| | |||||| ||| || Sbjct 274092 GGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCA 274151 Query 81121 TCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTC 81179 || | | | ||||| |||| | ||||||| | |||| | || || | ||| | Sbjct 274152 TCTG-CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAG-TCGGCCAGGCC 274209 Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239 ||||||||||| |||||||| || |||||| || |||||||| ||||||||| Sbjct 274210 AGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAA 274269 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTG 81299 ||| || |||||||| ||| ||| ||||| ||| || ||||||| | || || Sbjct 274270 GAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTG 274329 Query 81300 GTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC 81359 ||| ||||| || | ||||| | || || || ||||| ||||| || || | ||| Sbjct 274330 GTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGC 274389 Query 81360 GATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATAC 81416 || | ||| ||| ||||||||||| |||||| || ||||| ||| || || Sbjct 274390 GAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 274449 Query 81417 ACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTT 81476 ||| | ||| |||| || ||| | || |||||| || || | ||| || || | Sbjct 274450 ACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGT 274509 Query 81477 GGCGCGCACCTTGC--TGA---TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGA 81531 ||| || | ||| ||| ||| ||||| |||||||| | | ||| || ||| Sbjct 274510 GGCACGGA---TGCGATGAACGTTG--AGACCAATGCCACCGGCCATCTTGGAGATCATG 274564 Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC------- 81584 || || || | ||| || || || ||||| || || | |||||||| Sbjct 274565 GCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGG 274624 Query 81585 AAGCAAGA-AACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGG 81643 |||||||| |||||| | | ||||||| | || || ||||| ||||| || | Sbjct 274625 AAGCAAGAGGACAGCTGGGC--CTGAGGG------GTACCAGCGTTGAAGAGTGTGGGAG 274676 Query 81644 TCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATAT 81703 ||||| |||| | | | |||||||||| |||||||| ||||||| || | Sbjct 274677 AAGCGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGT 274736 Query 81704 CGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 ||||||| ||||| | || |||||||| | ||||| |||||| ||||| Sbjct 274737 CGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCG 274789 >seq2064 Length=287033 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 ||||||||||||||||||||||| || || |||||||| ||||| |||| ||| | Sbjct 186032 GTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGAC 186091 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || ||||| | || ||||||||||||||||| ||||| || ||||||||||| | || Sbjct 186092 AACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATC 186151 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||||||||| || ||||| | || ||||| | ||||| || |||| ||||| Sbjct 186152 TTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAG 186211 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | || ||||||| || ||||| Sbjct 186212 TCTACCCTCCACTTGGTGCTGCGTCTCCGTGGTGG 186246 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || || ||||| ||||| Sbjct 186476 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 186535 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || ||||||||||||||||| |||||||| || ||| Sbjct 186536 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 186595 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| ||||| | ||||||| || ||| | ||||| || Sbjct 186596 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 186655 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || ||||| || ||| | ||||| || || || || Sbjct 186656 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGGTCA 186705 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| ||||| |||||||| ||||| |||| ||| | || ||||| | Sbjct 185760 ACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGTCC 185819 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || ||||||||||| | || || ||||||||| Sbjct 185820 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTAAG 185879 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| | ||||| || |||| ||||| || || ||||| Sbjct 185880 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 185939 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || ||||| ||||| Sbjct 185940 TTGGTTCTCCGCCTTCGTGGTGG 185962 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||||||||| |||||||| || || Sbjct 186248 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 186307 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||| || |||||||| || || || |||||| Sbjct 186308 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 186367 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 186368 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 186427 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| ||||| ||||| ||| | || || ||||| || Sbjct 186428 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGG 186474 >seq1255 Length=235273 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || || |||||||| || |||||||| ||||| Sbjct 166231 ATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 166290 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 166291 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 166350 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || ||||| ||||| |||||||| | || ||||| | ||||| Sbjct 166351 CAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 166410 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || |||||||| | ||| |||| || || ||||| Sbjct 166411 AACATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCGCCTCCGTGGTGG 166460 >seq1448 Length=227951 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 172840 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 172899 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 172900 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 172959 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| |||||||| | || ||||| | ||||| || |||| ||| Sbjct 172960 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 173019 Query 27595 G 27595 | Sbjct 173020 G 173020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570289754763520