Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1396 86.0 5e-12 >seq1396 Length=452294 Score = 86.0 bits (94), Expect = 5e-12 Identities = 185/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 30188 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30247 |||||||| || ||| |||| ||| || | | | ||| ||||| || || || Sbjct 169359 AGCTGATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAG 169418 Query 30248 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC 30307 || | ||| ||||| ||||| || || || ||||| || |||| | ||| || ||| Sbjct 169419 TGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGATGCGAGAGGCCA 169478 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAG 30367 |||| | || || | || |||||| ||||||||||||| || || ||| Sbjct 169479 ACGCTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACGCCTGCCTCGCTC 169538 Query 30368 AGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 || | |||| |||| ||||| |||||||||||||||||| | | |||||| Sbjct 169539 AGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTCGGCGATGACGGC--G 169595 Query 30427 CCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 30456 | || ||||| | ||| || || |||||||| Sbjct 169596 CGAAGGAAGACGCGCTTCGTGGTAAGGAGGGG 169627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406296059274432