Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 131 4e-25
seq1255 131 4e-25
seq637 125 2e-23
seq1534 118 3e-21
seq1484 95.1 3e-14
seq852 95.1 3e-14
>seq2064
Length=287033
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| || || || || || |||| ||||| || ||| || | |||||
Sbjct 186687 AGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCC 186628
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||| || || || || || ||||| |||||||| ||||||||
Sbjct 186627 TCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 186568
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || || || ||||| || | || || |||| |||||||||
Sbjct 186567 TGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTC 186508
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||||||| || | ||| | |||||
Sbjct 186507 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 186476
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || ||||| ||||| || || | ||||| |||| || || | || ||
Sbjct 186459 AGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 186400
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| | || || |||||||| || ||||| ||||| |||
Sbjct 186399 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCT 186340
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || |||||||||||||| | ||| || || | || || |||
Sbjct 186339 TGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTC 186280
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 186279 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 186248
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | |||||| || || || || |||| ||||| |||| || ||
Sbjct 186241 ACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 186182
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| | || || |||||||| ||||| ||
Sbjct 186181 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCC 186122
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| |||||| |||||||| || |||| || || || |
Sbjct 186121 CTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 186062
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 186061 GGTGATGGTCTTGCCGGT 186044
Score = 114 bits (126), Expect = 3e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || || || || || |||| ||||| |||| || ||
Sbjct 185957 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 185898
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| | || || |||||||| ||||| ||
Sbjct 185897 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCC 185838
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| |||||| |||||||| || |||| || || || |
Sbjct 185837 CTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 185778
Query 225672 CGTGATCGTCTTGCCCGT 225689
|| || |||||||| ||
Sbjct 185777 GGTAATGGTCTTGCCGGT 185760
>seq1255
Length=235273
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| | ||| ||||| || || || |||| ||||| |||| | ||
Sbjct 166455 ACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 166396
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| || || || ||||| || || || ||
Sbjct 166395 GCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCC 166336
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 166335 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 166276
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| ||||| | || || | ||| | |||||
Sbjct 166275 GGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 166234
>seq637
Length=3857
Score = 125 bits (138), Expect = 2e-23
Identities = 198/281 (70%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| ||||| ||||| |||| | ||||| || | ||||||| || ||| | |
Sbjct 3299 ACTTTATACTTAATTTTTGCTTTATTTTCAGGGTTATTAGGTACAGCTTTCTCTGTATTA 3358
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTG-AGTGGTAATAGCCAACTTT 7558
||||| ||||||||| || || ||| |||| ||||| || ||| |||| | |
Sbjct 3359 ATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATTTCAG-----ATAACCAATTAT 3413
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| || ||| ||||| || ||||| | ||||||| |||||| | ||||||||||
Sbjct 3414 ATAATAGTATAATTACAGCACATGCTATACTTATGATATTCTTTATGGTTATGCCGGCAT 3473
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| || || ||||| || || | || | ||||||||| | |||| ||||||||||| |
Sbjct 3474 TAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCTGATATGGCAT 3533
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
| ||||| | || || |||||||| ||| || |||| |||
Sbjct 3534 TCCCAAGATTAAATAACATAAGTTTCTGACTATTACCTCCT 3574
>seq1534
Length=294962
Score = 118 bits (130), Expect = 3e-21
Identities = 196/280 (70%), Gaps = 5/280 (2%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| ||||| ||||| |||| | ||||| || | ||||||| || ||| | |
Sbjct 196749 ACTTTATACTTAATTTTTGCTTTATTTTCAGGGTTATTAGGTACAGCTTTCTCTGTATTA 196808
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTA 7559
||||| ||||||||| || || ||| |||| ||||| | || | |||| | ||
Sbjct 196809 ATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATT---TCAGAAAA-CCAATTATA 196864
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
|| ||| ||||| || ||||| | ||||||| |||||| | ||||||| || |
Sbjct 196865 TAATAGTATAATTACAGCACATGCTATACTTATGATATTCTTTATGGTTATGCAGGCATT 196924
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
|| || ||||| || || | || | ||||||||| | |||| ||||||||||| ||
Sbjct 196925 AATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGTGGACCTGATATGGCATT 196984
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
||||| | || || |||||||| ||| || |||| |||
Sbjct 196985 CCCAAGATTAAATAACATAAGTTTCTGACTATTACCTCCT 197024
>seq1484
Length=366709
Score = 95.1 bits (104), Expect = 3e-14
Identities = 184/272 (68%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | ||| || ||||||| ||||| || |||| |||
Sbjct 274028 TTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCG 274087
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| || || |||| ||| || ||| || | || || |||| ||| | | ||||
Sbjct 274088 GTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTG 274147
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| | ||||||||| ||||||| |||| || || | |||||| ||| | ||
Sbjct 274148 CCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGG 274207
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || ||||| | |||| |||| || || | | || ||||||||||||
Sbjct 274208 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 274267
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|||||||| | |||| | ||| ||||||
Sbjct 274268 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAG 274299
>seq852
Length=3241
Score = 95.1 bits (104), Expect = 3e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| ||||| || |||||||| | |||||| || | |||||||| ||||| ||||
Sbjct 203 TTCAGGGTGACCGAAGAATCAGAAAAGATGTTGGTATAATATAGGATCACCTCCACCTGC 144
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773
|| ||||| || ||||||||||||||||| ||||||||
Sbjct 143 TGTTTCAAAGAATGATGTATTAAAATTTCTATCTGTTAAAAC 102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192486951129824
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