Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1396 91.5 1e-13 >seq1396 Length=452294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 27499 TACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 27558 ||||| || || || || | ||||||||| ||||| || || || ||||| || |||| Sbjct 169404 TACTCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCG 169463 Query 27559 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 | ||| || ||| |||| | || || | || |||||| ||||||||||||| Sbjct 169464 CGATGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTA 169523 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTC 27677 || || |||| || | |||| |||| ||||| |||||||||||||||||| Sbjct 169524 ACGCCTGCCTCGCTCAGTGCGAGGGAGGATGTGTTGCCCTC-GACGAACCACAGCAGCTC 169582 Query 27678 CTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGG 27722 | | |||||| | || ||||| | ||| || || |||||||| Sbjct 169583 GGCGATGACGGC--GCGAAGGAAGACGCGCTTCGTGGTAAGGAGGGG 169627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369494158243376