Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04- 19] 2,896 sequences; 53,597,417 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1255 132 1e-25 seq2064 91.5 3e-13 >seq1255 Length=235273 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||||||||| || ||||||||||| |||| | || | || || Sbjct 166445 AGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 166386 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | ||||||||| | | ||| || ||||| | Sbjct 166385 TCGAGCTGCTTT--CCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGT 166328 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | |||| ||| ||| || ||||| || |||| Sbjct 166327 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAG 166268 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| ||||| ||||||| |||||| Sbjct 166267 TCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 166234 >seq2064 Length=287033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| ||||| || ||||| || ||||||||||| || || || | ||||| Sbjct 186688 GAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATC 186629 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | || || ||||| || || | |||||| || | | || || ||||| || Sbjct 186628 CTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTC 186569 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | |||| ||| ||| || || || || || || Sbjct 186568 CTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGT 186509 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| ||||||| |||||| Sbjct 186508 CTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 186476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153777987479216