Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq2064 167 5e-36
seq1255 159 7e-34
seq1448 147 5e-30
seq2790 86.0 1e-11
>seq2064
Length=287033
Score = 167 bits (184), Expect = 5e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||| |||||||| || || || || || | ||| || || |||||||||||||||
Sbjct 186703 ACCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 186644
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| |||||||||||||| | || || || || || || | ||| || || || |
Sbjct 186643 CAAG-GTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAG 186585
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||||||||||||||| || ||||| | || ||| | || || |||||||||| ||||
Sbjct 186584 GAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGA 186525
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 186524 CCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 186476
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || |||||||| || ||||| | || ||| || || ||||||||||| |
Sbjct 186475 ACCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGA 186416
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || |||||||| || || ||||| ||
Sbjct 186415 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 186356
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||| ||||| ||||| | || ||| | ||||| ||||| || | ||||||
Sbjct 186355 GATACCCTCCTTATCTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 186296
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || ||||| || || | ||||||||||| ||||||||
Sbjct 186295 CTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 186248
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | || || || |||||||||||||| |
Sbjct 186247 ACCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 186188
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || |||||||| || || ||||| ||
Sbjct 186187 CAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 186128
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || ||| | ||||| || || || | |||||
Sbjct 186127 AATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGAC 186068
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|| || ||||| ||||| || || | ||||| ||||
Sbjct 186067 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 186030
Score = 125 bits (138), Expect = 1e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | || || || |||||||||||||| |
Sbjct 185963 ACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 185904
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || |||||||| || || ||||| ||
Sbjct 185903 CAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 185844
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || ||| | ||||| || || || | |||||
Sbjct 185843 AATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGAC 185784
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
|| || || || ||||| || ||
Sbjct 185783 CTCAAGGGTAATGGTCTTGCCGGT 185760
>seq1255
Length=235273
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | || || || |||||||||||||| |
Sbjct 166461 ACCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 166402
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || ||||||| || || |||||| ||
Sbjct 166401 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 166342
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || || | ||||| ||||| |||| || ||
Sbjct 166341 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 166282
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||||||||| | ||||| ||||| ||||||||
Sbjct 166281 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 166234
>seq1448
Length=227951
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || |||||||| ||||| || || || ||||| ||||||
Sbjct 173018 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 172959
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || ||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 172958 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 172899
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| || || || || ||||||||||||| ||||| |||||
Sbjct 172898 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 172840
>seq2790
Length=283765
Score = 86.0 bits (94), Expect = 1e-11
Identities = 159/233 (68%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 312486 CGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATCG 312545
|| |||||||| | | |||||||| || | ||| | ||||| || || || ||| |
Sbjct 79466 CGACCCCACTTCAGGGCCTTGACAATGGAGTTGAAATTATCGTCCATGAGAATGATCGAG 79525
Query 312546 GCTGCTTCCTTTGCAATGTCTGTACC---ACTCCCCATTGCACACCCGACGTCTGCTTCC 312602
| ||||||||| |||| || ||||| | | ||||| | | |||||||| || |
Sbjct 79526 GATGCTTCCTTGGCAACTTCGGTACCGGCAATACCCATGGAGAAGCCGACGTCGGCCGTC 79585
Query 312603 TTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCAAGGGCC 312662
|| || || || || ||||| | || || || || || |||| || || ||||
Sbjct 79586 TTGAGCGCAGGAGCATCGTTGGTTCCGTCTCCGGTCACAGCAACGATGTCACCCTTGGCC 79645
Query 312663 TTCATGAGCTGAACCAACTTATACTTATCCTCTGGGGATGAACGGGCAAGAAC 312715
|| | | ||| ||||| || ||| ||||| ||| || |||||||||||
Sbjct 79646 TTGAGGCGCTTCACCAAGATACGCTTGTCCTCGGGGCTGGAGCGGGCAAGAAC 79698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046700360741984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |