Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001625285.1_202016-04-
19] 2,896 sequences; 53,597,417 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1255 158 1e-33
seq1448 147 2e-30
seq2064 129 5e-25
>seq1255
Length=235273
Score = 158 bits (174), Expect = 1e-33
Identities = 153/195 (78%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||||||||||||||| |||| ||||||||||| || |||||
Sbjct 166425 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 166366
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAAC 41788
||||||||||| ||||| | ||| | || |||||||||| ||| || ||| ||
Sbjct 166365 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 166306
Query 41789 GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848
| || | |||||| ||||||||||| | || || || |||||||| || |||||
Sbjct 166305 GTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTG 166248
Query 41849 ACGAAAATCTGCATG 41863
||||| |||||||||
Sbjct 166247 ACGAAGATCTGCATG 166233
>seq1448
Length=227951
Score = 147 bits (162), Expect = 2e-30
Identities = 144/184 (78%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 173020 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 172961
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| |||||| ||||| | ||||| || |||||||||| ||| || ||| || |
Sbjct 172960 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 172901
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 172900 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 172843
Query 41851 GAAA 41854
||||
Sbjct 172842 GAAA 172839
>seq2064
Length=287033
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || |||||||| || |||||||||||||| ||||||||
Sbjct 186474 CCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAC 186415
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||| ||||| |||| |||||| ||||| | |||
Sbjct 186414 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 186355
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||| | | ||| | || | | ||| | | | ||||| ||| || ||
Sbjct 186354 ATACCCTCCTTAT-CTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGAC 186296
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 186295 CTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 186248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462287264595200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |