Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq444 109 1e-18
>seq444
Length=118335
Score = 109 bits (120), Expect = 1e-18
Identities = 274/408 (67%), Gaps = 10/408 (2%)
Strand=Plus/Plus
Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296
||||||| ||||| ||| ||| | |||||||| || | || |||||| |||
Sbjct 61134 CCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCA 61193
Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355
|| ||| || ||||||||||| || | | || | | || | || || | ||| ||
Sbjct 61194 TCTCTCGTGATGAGGGTCTCCA-CACCGACTTTGCCTGCCTCCTCTACTCTCACCTCAAG 61252
Query 230356 AACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAA 230412
||| | ||| | || ||||| | | || ||| || || || | | |||
Sbjct 61253 AACCGCC--CCAG-CAAGCAGGTCATTGAGGACATTATTGTCGATGCTGTCAAGATCGAG 61309
Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTAT 230471
|||||||| | || ||| | || || ||| || | ||||||||| | | || ||
Sbjct 61310 CAGGAGTTCCTGACCGAGGCTCTGCCTTG-CGCTCTGCTCGGCATGAACTCCAACCTGAT 61368
Query 230472 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGT 230531
| |||||||| || ||||| || ||||| | || ||||| ||||| | || || ||
Sbjct 61369 GAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGT 61428
Query 230532 GTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591
||||| ||| || || || | ||||||||| ||| || || || ||||||||
Sbjct 61429 CTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAA 61488
Query 230592 CTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
|||||| || |||||||| ||||| |||| | | ||||| |||||
Sbjct 61489 CTTCTTTGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGTTATGAA 61536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057809958708680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |