Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq17 192 7e-44
>seq17
Length=653669
Score = 192 bits (212), Expect = 7e-44
Identities = 428/643 (67%), Gaps = 56/643 (9%)
Strand=Plus/Minus
Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730
|| ||| | ||| || | || ||||||| | |||||| || || || |||| ||||||
Sbjct 343867 CAACTGCACCTTGAGCGCATCAACGTGGTCGGCGTAGACATGTGCATCGCCCATGACGTG 343808
Query 145731 GATGAAGTCCCCGGGCTCGAGGCC-CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGT 145789
| | | || || ||||| | | || | |||| | ||||| |||||||| | ||
Sbjct 343807 CGTCAGGCTGCCAGGGACGAGGTCGCATGCGC-GGGCAATCATGTGCGTCAGCAGCGCGT 343749
Query 145790 AGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGC 145849
|||| || |||||||||||||| || || |||||||| | || ||||||||||||||||
Sbjct 343748 AGCTCGCGATGTTGAAGGGCACGCCAAGGCCCATGTCACAGGACCGCTGGTACAGCTGGC 343689
Query 145850 AGGAGAG---------------CTCCCCG-------------------CCCGCC------ 145869
|| || ||| ||| |||||
Sbjct 343688 AGTGCAGGTGGCCCTTTGGTTTCTCTCCGTCAGCGGGTGCAATGCGGGCCCGCGGGTAGG 343629
Query 145870 --ACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCC 145926
|||||||| || ||| | | |||||| ||||| |||||||| ||||||||
Sbjct 343628 AGACGTAGAATTGCGCAAAC-ATGTGGCAAGGCGGGAGGGCCATCTTCTTTAGGTCCGCG 343570
Query 145927 GGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCT 145983
|||||||| ||| |||| | || | | || ||| |||||| |||| | ||
Sbjct 343569 GGGTTCCACGCGCTGAGAAGGA---TGCGGCGGTCGTACGGGTTCGTCTTCAGCTTGTGG 343513
Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTAC 146043
|| | || |||||| || |||||||| ||| |||||| ||||||| ||| || |||
Sbjct 343512 ATGACCTCGGCGAGCTGATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATAC 343453
Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103
|||| || ||||| | ||| ||||| |||||||| || || ||||| ||| || |
Sbjct 343452 TCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGA 343393
Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163
||| || || | | | | ||||| || || || |||||| ||||||||||||| |||
Sbjct 343392 TGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACG 343333
Query 146164 CC--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTT 146221
|| |||||| || | | |||| ||| ||| || |||||| ||||||||
Sbjct 343332 CCTGCCTCGCTCAGTG--CGAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTCGG 343275
Query 146222 CGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264
||| ||| | | |||||| | ||| ||||| || |||||
Sbjct 343274 CGATGACGGCGCGAAGGAAGACGCGCTTCGTGGTAAGGAGGGG 343232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590069158505440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |