Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq17 192 7e-44 >seq17 Length=653669 Score = 192 bits (212), Expect = 7e-44 Identities = 428/643 (67%), Gaps = 56/643 (9%) Strand=Plus/Minus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 || ||| | ||| || | || ||||||| | |||||| || || || |||| |||||| Sbjct 343867 CAACTGCACCTTGAGCGCATCAACGTGGTCGGCGTAGACATGTGCATCGCCCATGACGTG 343808 Query 145731 GATGAAGTCCCCGGGCTCGAGGCC-CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGT 145789 | | | || || ||||| | | || | |||| | ||||| |||||||| | || Sbjct 343807 CGTCAGGCTGCCAGGGACGAGGTCGCATGCGC-GGGCAATCATGTGCGTCAGCAGCGCGT 343749 Query 145790 AGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGC 145849 |||| || |||||||||||||| || || |||||||| | || |||||||||||||||| Sbjct 343748 AGCTCGCGATGTTGAAGGGCACGCCAAGGCCCATGTCACAGGACCGCTGGTACAGCTGGC 343689 Query 145850 AGGAGAG---------------CTCCCCG-------------------CCCGCC------ 145869 || || ||| ||| ||||| Sbjct 343688 AGTGCAGGTGGCCCTTTGGTTTCTCTCCGTCAGCGGGTGCAATGCGGGCCCGCGGGTAGG 343629 Query 145870 --ACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCC 145926 |||||||| || ||| | | |||||| ||||| |||||||| |||||||| Sbjct 343628 AGACGTAGAATTGCGCAAAC-ATGTGGCAAGGCGGGAGGGCCATCTTCTTTAGGTCCGCG 343570 Query 145927 GGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCT 145983 |||||||| ||| |||| | || | | || ||| |||||| |||| | || Sbjct 343569 GGGTTCCACGCGCTGAGAAGGA---TGCGGCGGTCGTACGGGTTCGTCTTCAGCTTGTGG 343513 Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTAC 146043 || | || |||||| || |||||||| ||| |||||| ||||||| ||| || ||| Sbjct 343512 ATGACCTCGGCGAGCTGATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATAC 343453 Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103 |||| || ||||| | ||| ||||| |||||||| || || ||||| ||| || | Sbjct 343452 TCGGCGCCAAAGTGTCGCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGA 343393 Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 ||| || || | | | | ||||| || || || |||||| ||||||||||||| ||| Sbjct 343392 TGCGAGAGGCCAACGCTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACG 343333 Query 146164 CC--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTT 146221 || |||||| || | | |||| ||| ||| || |||||| |||||||| Sbjct 343332 CCTGCCTCGCTCAGTG--CGAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTCGG 343275 Query 146222 CGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 ||| ||| | | |||||| | ||| ||||| || ||||| Sbjct 343274 CGATGACGGCGCGAAGGAAGACGCGCTTCGTGGTAAGGAGGGG 343232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590069158505440