Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq444 185 9e-42
seq456 138 1e-27
seq120 132 5e-26
seq154 114 1e-20
>seq444
Length=118335
Score = 185 bits (204), Expect = 9e-42
Identities = 314/450 (70%), Gaps = 4/450 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040
|||||||||| ||||| ||| |||||| || | |||| | || |||||| | |||||
Sbjct 61023 AGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGAC-GAGAAGTCCTCCTTCGCCCAGCGC 61081
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
|| || |||||||| ||||||||||| ||||||| || |||||| |||| ||
Sbjct 61082 CTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 61141
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| || || || ||||| || ||||| ||| ||||||||||||||| |
Sbjct 61142 TGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 61201
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|| |||||||| || |||||||||||| | || | | || | | | || ||
Sbjct 61202 GATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCACCTCAAGAACCGCCCC 61261
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | | | | ||| || | ||| || ||| ||||||||| |||||
Sbjct 61262 AGCAAGCAGGTCATTGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTG 61321
Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
||||| || ||||| |||| |||||| || | || | | | |||| ||| |||||
Sbjct 61322 ACCGAGGCTCTGCC-TTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 61380
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||||||||| ||| | || || | | || | | | |||| |||||| | |
Sbjct 61381 TGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGTCTACAAGTCTTC 61440
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC 117429
||| ||| | ||||||||| | ||||||
Sbjct 61441 CAATCCGTTCGACTTTATGGAGAACATCTC 61470
Score = 174 bits (192), Expect = 2e-38
Identities = 212/286 (74%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||||| ||||||| | || |||
Sbjct 60613 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 60672
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | || |||| | ||| | ||||||
Sbjct 60673 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTC 60731
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
|||| | || ||||| ||||| || ||| ||||| ||||||||||| ||||||||||
Sbjct 60732 GCACATCCTCGCCTTCTTCGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGTCGAGCG 60791
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| ||||| |||||| ||||||| || |||||||| ||||| || ||| ||
Sbjct 60792 CTTCAGCGGCGAGGTCCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATGAT 60851
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | ||||| || | || ||| ||||||||||| |||
Sbjct 60852 GGAGAACATCCACTCAGAGACCTACTCGTTGCTCATCGACACCTAC 60897
>seq456
Length=89672
Score = 138 bits (152), Expect = 1e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 20729 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 20788
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 20789 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 20848
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || |||| ||||||||| ||||||||||
Sbjct 20849 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 20908
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||||||| | || || || | || |||||
Sbjct 20909 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCGC 20944
>seq120
Length=409222
Score = 132 bits (146), Expect = 5e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || || ||| | || |||||| | |
Sbjct 294139 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 294080
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| || || ||||| |||||| | |||||
Sbjct 294079 GACACCATCGACAACG-TCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCA 294021
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| ||||| ||||| || |||| |||||||| |||||||||
Sbjct 294020 GCAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAA 293961
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| |||||||| | || |||||||| ||
Sbjct 293960 CATTCAGAAGGAATCTACTCTGCATCTCGT 293931
Score = 131 bits (144), Expect = 2e-25
Identities = 154/206 (75%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || ||||| || ||||| ||||||||| | || ||||| || |||| | | |
Sbjct 294357 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCG 294298
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| | ||| || |||| ||||| |||||||| ||| | |||||||| || |
Sbjct 294297 ACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 294239
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || || ||||| || |||| |||||||| |||||||||||||||||||
Sbjct 294238 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAG 294179
Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904
||| | || || || | ||| ||||
Sbjct 294178 GAGTCTACCCTCCACTTGGTGCTGCG 294153
Score = 114 bits (126), Expect = 1e-20
Identities = 136/182 (75%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||| ||| | || ||||| || |||| | | | | |||| | |||
Sbjct 294629 TCACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACG-TGAAG 294571
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| |||| ||||| |||||||| ||| | |||||||| || | |||| ||| ||
Sbjct 294570 TCTAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGT 294511
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| |||||||| |||||||||||||||||||||| | || ||
Sbjct 294510 AAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTT 294451
Query 40891 CA 40892
||
Sbjct 294450 CA 294449
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || || || ||||| | || ||||| | |
Sbjct 293911 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 293852
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| ||||| || |||| ||||| ||||| || || | || ||
Sbjct 293851 GACACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 293793
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||| ||||| ||| |||| || | |||||| | | ||||||||
Sbjct 293792 GCAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAA 293733
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | ||||| || || ||
Sbjct 293732 CATCCAGAAGGAGTCGACGCTTCACCTTGT 293703
>seq154
Length=370784
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 211049 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 211108
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| | |||||||| || |
Sbjct 211109 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTG 211168
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || |||| ||||||||| |||||||||||||||||||
Sbjct 211169 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 211228
Query 40879 G 40879
|
Sbjct 211229 G 211229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515212527911360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |