Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq120 105 8e-18
seq456 104 3e-17
>seq120
Length=409222
Score = 105 bits (116), Expect = 8e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||||| || | || |||||| || || ||||| || | ||| || || |
Sbjct 294152 ACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 294211
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || ||||||||||||||||| || | ||||||||||||| || | || ||||||
Sbjct 294212 GTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTT 294271
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| | || | | ||| | | | || ||| || || || || | ||||
Sbjct 294272 GTCC-TGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGA 294330
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTAC 43171
|||| ||||| || |||||||| ||
Sbjct 294331 TGGTCTTGCCGGTAAGCGTCTTGAC 294355
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||| ||||| || | ||| || || |||| || |||||||| ||||||||
Sbjct 293949 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 294008
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| | ||||||||||||| || | | |||||| | | ||| | || | |||| |||
Sbjct 294009 ATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTAT-CTTGAATCTTCGACTTGA-CGT 294066
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| |||||| || || | || || || ||||| || || ||||| |
Sbjct 294067 TGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAA 294126
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 294127 CGAAGATCTGCAT 294139
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||| || || |||| || |||||||||||||||||
Sbjct 294460 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAA 294519
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091
|| | ||||||||||||| || | || ||||||||||
Sbjct 294520 GATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 294559
>seq456
Length=89672
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| || | || |||||| || || ||||| || | || || || ||
Sbjct 20943 CGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 20884
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| |||||||| || || ||||||||||| | || | || |||||||
Sbjct 20883 TCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 20824
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | |||||| || ||||| || | |||||
Sbjct 20823 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 20764
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || ||||| || ||||| || ||||| |||||
Sbjct 20763 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 20729
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571810194962080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |