Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq18 107 4e-18 seq369 84.2 5e-11 >seq18 Length=318601 Score = 107 bits (118), Expect = 4e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| ||||| | || || |||| || || ||||| ||||||||||| || ||||| || Sbjct 279088 CCTCCCTCACCTCCTCCTCTACGGGCCCCCGGGAACGGGCAAGACGTCGACGATCCTCGC 279147 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || || ||| | | | |||| | ||||||| | || || |||||||| ||||| Sbjct 279148 CCTCGCGCGACGCATCTACGGCGCAGAGAACATGCGGCAGATGGTCCTCGAGCTCAACGC 279207 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171 || ||||| ||||| | |||||||| ||||| |||||||||| ||| || Sbjct 279208 CTCGGACGACCGCGGCATCGACGTCGTGCGCGAGCAGATCAAGACGTTCGCC 279259 >seq369 Length=515494 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 254213 CAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCG 254272 |||||||||||| || |||||||| |||| |||||| | | ||| ||| || ||||| Sbjct 401006 CAAGCTCGTGATTCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAAGCTCTCCG 401065 Query 254273 CCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC 254332 |||||||||||||| ||||| |||||| || | | | |||||| | ||| Sbjct 401066 CCGAACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACCA---GTC 401122 Query 254333 ---GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367 |||||||||| |||||| || || ||||||| Sbjct 401123 CAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCA 401160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073752147093248