Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq456 118 8e-22
seq120 105 5e-18
seq154 102 6e-17
>seq456
Length=89672
Score = 118 bits (130), Expect = 8e-22
Identities = 157/217 (72%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| || ||| |||| ||
Sbjct 20937 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 20878
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| ||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 20877 AGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 20818
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| || |||||
Sbjct 20817 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 20758
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343
||||| || ||||| || ||||| |||||| ||||||
Sbjct 20757 CCCGTGAGGGTCTTGACGAAGATCTGCATGATTGCCT 20721
>seq120
Length=409222
Score = 105 bits (116), Expect = 5e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| ||||| ||||||||| ||||||||||| ||| ||| | || |||| ||
Sbjct 293708 GTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTG 293767
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| || | ||||| || |||||||| | ||||||||||||| ||| ||
Sbjct 293768 CTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTT 293827
Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311
||| | || | || | ||||| | ||| ||||| | || |||||||| || |
Sbjct 293828 CGACTTGA-CGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGG 293886
Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336
||| |||||| || ||||| |||||
Sbjct 293887 TCAAAGTCTTGACGAAGATCTGCAT 293911
Score = 105 bits (116), Expect = 5e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
||||||||||||||||||||| ||| ||| |||| || || || || || |||||
Sbjct 293949 TCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 294008
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
||||| ||||| |||||||| || | ||||||||| || ||| || ||| ||
Sbjct 294009 ATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTCGACTTGACGTTG 294068
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| || ||||| | |||||| |||||||| || || ||||| ||
Sbjct 294069 TCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACG 294128
Query 45326 AAGATTTGCAT 45336
||||| |||||
Sbjct 294129 AAGATCTGCAT 294139
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| ||
Sbjct 294159 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 294218
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| ||||| ||||| |||||||| || | |||||||||||| |
Sbjct 294219 AGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 294278
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || ||| ||||| | ||| || ||||||
Sbjct 294279 ATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTG 294338
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || || ||||| ||
Sbjct 294339 CCGGTAAGCGTCTTGAC 294355
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| ||
Sbjct 294443 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 294502
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| ||||| ||||| |||||||| || | |||||||||||| |
Sbjct 294503 AGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 294562
Query 45248 ATTTT 45252
|| ||
Sbjct 294563 ATCTT 294567
>seq154
Length=370784
Score = 102 bits (112), Expect = 6e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| |||||||||||| || ||| |||| || || || || |||||||| |
Sbjct 211229 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 211170
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
|||| ||||| |||||||| || | |||||||||||| || || ||| ||
Sbjct 211169 TCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 211110
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | ||||| ||| ||||| | |||||| ||||| |||||||| |||||||| |
Sbjct 211109 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 211050
Query 45327 A 45327
|
Sbjct 211049 A 211049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395070211681756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |