Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq431 473 1e-128
seq444 149 6e-31
seq120 109 5e-19
seq456 95.1 1e-14
>seq431
Length=114165
Score = 473 bits (524), Expect = 1e-128
Identities = 1242/1885 (66%), Gaps = 32/1885 (2%)
Strand=Plus/Minus
Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164
|| ||| ||||| ||||| |||| || || | | ||||| || || ||||||||
Sbjct 110921 CTGGTCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCC 110862
Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224
|||||||||||| | |||||| || || || || || | ||| || ||||
Sbjct 110861 CGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTCGG 110802
Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284
| ||||| | |||| |||||| ||| || || || || || || ||||| ||
Sbjct 110801 GTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCAGC 110742
Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344
||| | | | |||||| || |||||||| || ||||||||||| | ||| |||
Sbjct 110741 CATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTC 110682
Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404
|| || ||| |||||| || ||||| | | ||||| || || ||
Sbjct 110681 AGTAGGGATGTTGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCAT 110622
Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTG 22464
| |||| ||||||||| ||| || | || || | || | |||| || || ||
Sbjct 110621 GGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTG 110562
Query 22465 AAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523
||||| || | ||||| | || || ||||| |||||||| ||| | || || || | |
Sbjct 110561 GAACTCACCAG-CAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACT 110503
Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583
| ||||| |||| ||||| | ||| ||| |||||||| ||||| | || || ||||
Sbjct 110502 CGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGT 110443
Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641
| | | ||||||| |||| | | || ||| || ||||||||| ||||| ||
Sbjct 110442 TGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTC--CCAGTCCCAGAGATCCGA 110385
Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701
||| | ||||| |||||| ||||| || | | ||| || | ||| || ||
Sbjct 110384 GGGCTTGACATT---CCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCCTC 110328
Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGCCGT 22760
|||||| | ||| || || | | ||| || | ||| | | | || |||
Sbjct 110327 GTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGCAGCGT 110269
Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTAC 22816
|| || ||||| ||||| |||||||| | ||| || || ||| ||| |
Sbjct 110268 GGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGAC----TCGAAG 110213
Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876
||||| |||| || ||| || || || | |||||| || || | ||| || || |||
Sbjct 110212 GGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGG 110153
Query 22877 TTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932
| || || || |||| ||| | | ||| || || ||||| |
Sbjct 110152 TGACGCATGTTG----CTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGAT 110097
Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992
|||||||| ||| | | |||| | || | | |||||||| ||
Sbjct 110096 TCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 110037
Query 22993 GCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049
|||| ||||| ||||||| || | ||||| |||||| || ||||| || || ||
Sbjct 110036 GCCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGAC 109977
Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCC 23109
||| || | |||||| | || || || || || ||| | || |||||
Sbjct 109976 CTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCC 109917
Query 23110 CAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCC 23169
| || |||||||||| || || ||| | |||||||||||||||| | || ||||
Sbjct 109916 AAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCC 109857
Query 23170 CGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCAC 23229
|||||| ||| | ||||| ||| || ||| | |||| || | | ||| |
Sbjct 109856 AGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATG-GTCTTGC 109798
Query 23230 GTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGT 23288
| ||| ||| | ||||||||| | |||||| || || || || | ||||| ||||
Sbjct 109797 GACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGT 109738
Query 23289 CGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGC 23348
|||||||||| || | | | || ||||||||| |||| || || || || |
Sbjct 109737 CGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCC 109678
Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408
|||| || || || || ||||| |||||| ||| || || ||||| || |||||||
Sbjct 109677 TCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCT 109618
Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468
| |||||| |||||| || |||||| ||||| || || || || ||||| ||||| |
Sbjct 109617 CCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAA 109558
Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528
|||| | ||| || || ||||| | || ||||| ||||| |||||||| || || ||||
Sbjct 109557 GGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGT 109498
Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588
||||| | || | ||||| || |||| |||||| || | ||| ||| || | |
Sbjct 109497 TGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATAT 109438
Query 23589 TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648
|| || | || || | | ||||||| || ||| ||||| ||| || || || |
Sbjct 109437 AGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGA 109378
Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708
|||| ||||| || || ||||||||||| ||||| || |||||| || | |||
Sbjct 109377 TCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGA 109318
Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768
| | ||| || || |||| || || | || ||| | || ||| ||||| || |
Sbjct 109317 CGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAG 109258
Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828
|||| || ||| || ||||||| || ||||| || |||||| || |||| ||| |
Sbjct 109257 CGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGT 109198
Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGC 23888
| || ||||| | |||||| ||||| ||||||| || ||||||||| | | ||
Sbjct 109197 CACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 109138
Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948
||| || |||| || ||||| | | || || || || || ||||| | ||||| |
Sbjct 109137 CGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGA 109078
Query 23949 AGTCACGATCGTGCACTATGGCCGA 23973
|||| || || | || ||||| ||
Sbjct 109077 AGTCGCGGTCATAGACGATGGCAGA 109053
>seq444
Length=118335
Score = 149 bits (164), Expect = 6e-31
Identities = 357/533 (67%), Gaps = 14/533 (3%)
Strand=Plus/Plus
Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973
||||||||| || ||| | | || ||||| | || | | || | |||||| || |
Sbjct 61021 CAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTCCTCCTTCGCCCAGCG 61080
Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033
|| | || |||||||||||||| ||||| ||||| || ||| || | || ||
Sbjct 61081 CCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 61140
Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093
||| | ||||| || || || ||||| || ||||| || ||||||| | || || ||
Sbjct 61141 CTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 61200
Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153
|| ||||||||||| || || ||||| ||||| | ||||||||| |||| ||||
Sbjct 61201 TGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCAC---CTCAA-GAACC 61256
Query 58154 GACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208
| | | | | ||| || | ||||||||| ||| || ||| |||||| | |||
Sbjct 61257 GCCCCAGCA-AGCAGGTCATTGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAG 61315
Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268
|| | ||||| || || || || ||||||| |||||| | ||||| ||
Sbjct 61316 TTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 61375
Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326
||||||||||| || || ||| | || ||| | | || | || | ||| ||||
Sbjct 61376 TACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGTC--TACA 61433
Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386
| | |||||||| || |||||| | ||||| || | |||||||| ||||| |
Sbjct 61434 AGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCT 61493
Query 58387 TCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439
| || || ||| ||| || || || ||| || |||| | | | ||||
Sbjct 61494 TTGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGTTATGAACAGCACCAAG 61546
>seq120
Length=409222
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||| |||| || || |||||||| | || || || | ||
Sbjct 293911 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 293852
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || ||||||||| || | || ||||| |||
Sbjct 293851 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 293792
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||||||||| |||||||| || || |||| || || |||
Sbjct 293791 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 293732
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || || || ||||| ||||| || || || | ||| | || |||
Sbjct 293731 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGGT 293684
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || ||||| || || ||| | || || ||| ||||
Sbjct 294139 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 294080
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || || || ||||| || | || |||||||||
Sbjct 294079 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 294020
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||||||||| ||| | || ||| || || ||| || |||
Sbjct 294019 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 293960
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || ||||| ||||| ||||| || ||| | || | || ||||
Sbjct 293959 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGGTA 293911
>seq456
Length=89672
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| || || || || || |||||| | || || ||
Sbjct 20724 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 20783
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||| ||| | || || |
Sbjct 20784 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 20843
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || |||||||| || ||| | || ||| || | ||| |
Sbjct 20844 ACCAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 20903
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| ||||| || || || || |||||||| |||| ||
Sbjct 20904 ACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCCT 20940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445760627325120
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