Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq431 473 1e-128 seq444 149 6e-31 seq120 109 5e-19 seq456 95.1 1e-14 >seq431 Length=114165 Score = 473 bits (524), Expect = 1e-128 Identities = 1242/1885 (66%), Gaps = 32/1885 (2%) Strand=Plus/Minus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| ||||| ||||| |||| || || | | ||||| || || |||||||| Sbjct 110921 CTGGTCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATGCC 110862 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||||||||| | |||||| || || || || || | ||| || |||| Sbjct 110861 CGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTCGG 110802 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| |||||| ||| || || || || || || ||||| || Sbjct 110801 GTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCAGC 110742 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| | | | |||||| || |||||||| || ||||||||||| | ||| ||| Sbjct 110741 CATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTC 110682 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 || || ||| |||||| || ||||| | | ||||| || || || Sbjct 110681 AGTAGGGATGTTGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCAT 110622 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTG 22464 | |||| ||||||||| ||| || | || || | || | |||| || || || Sbjct 110621 GGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTG 110562 Query 22465 AAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 ||||| || | ||||| | || || ||||| |||||||| ||| | || || || | | Sbjct 110561 GAACTCACCAG-CAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACT 110503 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| |||| ||||| | ||| ||| |||||||| ||||| | || || |||| Sbjct 110502 CGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGT 110443 Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 | | | ||||||| |||| | | || ||| || ||||||||| ||||| || Sbjct 110442 TGCGGACACCGTGCTGCTTGATCTGCTCCTTCAAAGCGTC--CCAGTCCCAGAGATCCGA 110385 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 ||| | ||||| |||||| ||||| || | | ||| || | ||| || || Sbjct 110384 GGGCTTGACATT---CCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCCTC 110328 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCGCCGT 22760 |||||| | ||| || || | | ||| || | ||| | | | || ||| Sbjct 110327 GTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGACATGGTGAGGGCAGCGT 110269 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTAC 22816 || || ||||| ||||| |||||||| | ||| || || ||| ||| | Sbjct 110268 GGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGAC----TCGAAG 110213 Query 22817 GGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 ||||| |||| || ||| || || || | |||||| || || | ||| || || ||| Sbjct 110212 GGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGG 110153 Query 22877 TTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGT 22932 | || || || |||| ||| | | ||| || || ||||| | Sbjct 110152 TGACGCATGTTG----CTGTTGCGAGCCTCCTGAACAGGGTAGTGGTTGACGTCGATGAT 110097 Query 22933 TCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAAC 22992 |||||||| ||| | | |||| | || | | |||||||| || Sbjct 110096 TCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 110037 Query 22993 GCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCAC 23049 |||| ||||| ||||||| || | ||||| |||||| || ||||| || || || Sbjct 110036 GCCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGAC 109977 Query 23050 CTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCC 23109 ||| || | |||||| | || || || || || ||| | || ||||| Sbjct 109976 CTCATCAGGCGCGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCC 109917 Query 23110 CAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCC 23169 | || |||||||||| || || ||| | |||||||||||||||| | || |||| Sbjct 109916 AAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCC 109857 Query 23170 CGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCAC 23229 |||||| ||| | ||||| ||| || ||| | |||| || | | ||| | Sbjct 109856 AGTCTCGGTCTGGGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATG-GTCTTGC 109798 Query 23230 GTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGT 23288 | ||| ||| | ||||||||| | |||||| || || || || | ||||| |||| Sbjct 109797 GACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGT 109738 Query 23289 CGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGC 23348 |||||||||| || | | | || ||||||||| |||| || || || || | Sbjct 109737 CGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCC 109678 Query 23349 GTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCT 23408 |||| || || || || ||||| |||||| ||| || || ||||| || ||||||| Sbjct 109677 TCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCT 109618 Query 23409 CTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGA 23468 | |||||| |||||| || |||||| ||||| || || || || ||||| ||||| | Sbjct 109617 CCTTGCCGTGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAA 109558 Query 23469 GGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGT 23528 |||| | ||| || || ||||| | || ||||| ||||| |||||||| || || |||| Sbjct 109557 GGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGT 109498 Query 23529 TGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACAC 23588 ||||| | || | ||||| || |||| |||||| || | ||| ||| || | | Sbjct 109497 TGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATAT 109438 Query 23589 TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATA 23648 || || | || || | | ||||||| || ||| ||||| ||| || || || | Sbjct 109437 AGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGA 109378 Query 23649 TCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGA 23708 |||| ||||| || || ||||||||||| ||||| || |||||| || | ||| Sbjct 109377 TCATGGCGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGA 109318 Query 23709 CCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGG 23768 | | ||| || || |||| || || | || ||| | || ||| ||||| || | Sbjct 109317 CGAGGAAGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAG 109258 Query 23769 CGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCT 23828 |||| || ||| || ||||||| || ||||| || |||||| || |||| ||| | Sbjct 109257 CGTGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGT 109198 Query 23829 CTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGC 23888 | || ||||| | |||||| ||||| ||||||| || ||||||||| | | || Sbjct 109197 CACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 109138 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 ||| || |||| || ||||| | | || || || || || ||||| | ||||| | Sbjct 109137 CGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGA 109078 Query 23949 AGTCACGATCGTGCACTATGGCCGA 23973 |||| || || | || ||||| || Sbjct 109077 AGTCGCGGTCATAGACGATGGCAGA 109053 >seq444 Length=118335 Score = 149 bits (164), Expect = 6e-31 Identities = 357/533 (67%), Gaps = 14/533 (3%) Strand=Plus/Plus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | | || ||||| | || | | || | |||||| || | Sbjct 61021 CAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAAGTCCTCCTTCGCCCAGCG 61080 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || | || |||||||||||||| ||||| ||||| || ||| || | || || Sbjct 61081 CCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 61140 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || || ||||| || ||||| || ||||||| | || || || Sbjct 61141 CTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 61200 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 || ||||||||||| || || ||||| ||||| | ||||||||| |||| |||| Sbjct 61201 TGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCAC---CTCAA-GAACC 61256 Query 58154 GACGCGGGATCGCA--TCTT---GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | ||| || | ||||||||| ||| || ||| |||||| | ||| Sbjct 61257 GCCCCAGCA-AGCAGGTCATTGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAG 61315 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| || || || || ||||||| |||||| | ||||| || Sbjct 61316 TTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 61375 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326 ||||||||||| || || ||| | || ||| | | || | || | ||| |||| Sbjct 61376 TACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCAATGACAAGGTC--TACA 61433 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 | | |||||||| || |||||| | ||||| || | |||||||| ||||| | Sbjct 61434 AGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCT 61493 Query 58387 TCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439 | || || ||| ||| || || || ||| || |||| | | | |||| Sbjct 61494 TTGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGTTATGAACAGCACCAAG 61546 >seq120 Length=409222 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || |||||||| | || || || | || Sbjct 293911 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 293852 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| || | || ||||| ||| Sbjct 293851 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 293792 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| |||||||| || || |||| || || ||| Sbjct 293791 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 293732 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| ||||| || || || | ||| | || ||| Sbjct 293731 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGGT 293684 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || || ||| |||| Sbjct 294139 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 294080 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || || ||||| || | || ||||||||| Sbjct 294079 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 294020 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||||||||| ||| | || ||| || || ||| || ||| Sbjct 294019 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 293960 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| ||||| ||||| || ||| | || | || |||| Sbjct 293959 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGGTA 293911 >seq456 Length=89672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || || || || |||||| | || || || Sbjct 20724 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGT 20783 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | || || | Sbjct 20784 CTTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTG 20843 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || |||||||| || ||| | || ||| || | ||| | Sbjct 20844 ACCAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 20903 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || || |||||||| |||| || Sbjct 20904 ACAACATCCAGAAGGAGTCTACTCTTCACTTGGTCCT 20940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760627325120