Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq431 129 8e-25
>seq431
Length=114165
Score = 129 bits (142), Expect = 8e-25
Identities = 434/673 (64%), Gaps = 16/673 (2%)
Strand=Plus/Minus
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
||||| || || | || ||||| | | ||| || |||| | || || | |||||
Sbjct 109729 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 109670
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
||||| || |||||||| ||||| | || | || | || | | ||||| || ||
Sbjct 109669 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCG 109610
Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191
||||| ||||| | ||| | | | ||| ||||| || || | ||| |||
Sbjct 109609 TGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATG 109550
Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251
|| | | | || || |||||||| || ||||| || | ||| | ||| ||||| || |
Sbjct 109549 GCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 109490
Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311
|| | | ||| || | | ||| || || ||||| || || |||| |||||| ||
Sbjct 109489 ACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCG 109430
Query 66312 CTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369
| ||||| || | || |||| |||| || || || ||||| || ||||| | |
Sbjct 109429 GTGGCACGGATGCGATGAACGTTGA--GACCAATGCCACCGGCCATCTTGGAGATCATGG 109372
Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429
|||| || | || || ||||| ||||| ||| || ||| |||||| | || |
Sbjct 109371 CGCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGA 109312
Query 66430 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 66489
| || |||| ||| || || || || || || | || ||||||||||| |
Sbjct 109311 AGCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGG 109252
Query 66490 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCC 66543
| || |||| || | || ||||| || || || ||| | ||| | |||
Sbjct 109251 TGAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCC 109192
Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603
| || || || ||||||||||| | ||||||||| ||||| || | ||||||
Sbjct 109191 A------GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGC 109138
Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 66663
|| | || | | ||| ||| | ||||| || || || || ||||| | ||| |
Sbjct 109137 CGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGA 109078
Query 66664 AGTCTCGTTCGTA 66676
|||| || || ||
Sbjct 109077 AGTCGCGGTCATA 109065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658164276662240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |