Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq17 104 2e-17 >seq17 Length=653669 Score = 104 bits (114), Expect = 2e-17 Identities = 377/582 (65%), Gaps = 60/582 (10%) Strand=Plus/Minus Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989 ||||||||||| | ||| || || || || |||| | |||| | | || || ||| Sbjct 343849 ATCAACGTGGTCGGCGTAGACATGTGCATCGCCCATGACGTGCGTCAGG-CTGCCAGGGA 343791 Query 20990 C-AGGCC-CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047 | ||| | | || || | || |||| | |||||| || |||||||| |||||||| || Sbjct 343790 CGAGGTCGCATG-CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAG 343732 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG---------- 21097 || || || ||||||||||| ||||| |||||||||||||||| ||| Sbjct 343731 GGCACGCCAAGGCCCATGTCACAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTT 343672 Query 21098 -----CTCCCC---------------CCGAGCC------------ACGTAAAACTGACAC 21125 ||| || || ||| ||||| || || | | Sbjct 343671 GGTTTCTCTCCGTCAGCGGGTGCAATGCGGGCCCGCGGGTAGGAGACGTAGAATTG-CGC 343613 Query 21126 AAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184 ||| | ||| ||||| ||||| |||||| | |||||||||||||||||||||| | Sbjct 343612 AAACATGTGGCAAGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAG 343553 Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCACCACGTAACGCAGCT 21240 || |||||| || |||| || | | || | | ||| ||| || || |||| Sbjct 343552 AAGGATGCGGCGGTCGTACGGGTTCGTCTTCAGCTTGTGGAT-GACCTCG--GCG-AGCT 343497 Query 21241 GGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTC 21300 | || || ||||| ||| ||| | | | ||| | ||||| || ||||| |||| Sbjct 343496 GATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTC 343437 Query 21301 TCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCG 21360 ||| ||||| ||||| || || || || ||||| | ||| | | | || || || Sbjct 343436 GCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGATGCGAG-AGGCCAACG 343378 Query 21361 CCGCCAA-AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC-GCGGCGCGACAG 21418 | | ||| || | || || |||| ||||||| || || ||||| || ||| ||| Sbjct 343377 CTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACGCCTGCCTCGC-TCAG 343319 Query 21419 TTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTC 21460 | || |||| ||| |||| || |||||||||| ||| Sbjct 343318 TGCGAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTC 343277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427770598793280