Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq17 104 2e-17
>seq17
Length=653669
Score = 104 bits (114), Expect = 2e-17
Identities = 377/582 (65%), Gaps = 60/582 (10%)
Strand=Plus/Minus
Query 20930 ATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGT 20989
||||||||||| | ||| || || || || |||| | |||| | | || || |||
Sbjct 343849 ATCAACGTGGTCGGCGTAGACATGTGCATCGCCCATGACGTGCGTCAGG-CTGCCAGGGA 343791
Query 20990 C-AGGCC-CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047
| ||| | | || || | || |||| | |||||| || |||||||| |||||||| ||
Sbjct 343790 CGAGGTCGCATG-CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGTTGAAG 343732
Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG---------- 21097
|| || || ||||||||||| ||||| |||||||||||||||| |||
Sbjct 343731 GGCACGCCAAGGCCCATGTCACAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTT 343672
Query 21098 -----CTCCCC---------------CCGAGCC------------ACGTAAAACTGACAC 21125
||| || || ||| ||||| || || | |
Sbjct 343671 GGTTTCTCTCCGTCAGCGGGTGCAATGCGGGCCCGCGGGTAGGAGACGTAGAATTG-CGC 343613
Query 21126 AAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACAT 21184
||| | ||| ||||| ||||| |||||| | |||||||||||||||||||||| |
Sbjct 343612 AAACATGTGGCAAGGCGGGAGGGCCATCTTCTTTAGGTCCGCGGGGTTCCACGCGCTGAG 343553
Query 21185 AACGATGCGCCGATCGTGGGGCCGCCTGTTAA----TTAGATCCACCACGTAACGCAGCT 21240
|| |||||| || |||| || | | || | | ||| ||| || || ||||
Sbjct 343552 AAGGATGCGGCGGTCGTACGGGTTCGTCTTCAGCTTGTGGAT-GACCTCG--GCG-AGCT 343497
Query 21241 GGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTC 21300
| || || ||||| ||| ||| | | | ||| | ||||| || ||||| ||||
Sbjct 343496 GATCGACGCCCTGGCCCGTGTAATCCGTCTTGGCGTCGACATACTCGGCGCCAAAGTGTC 343437
Query 21301 TCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCG 21360
||| ||||| ||||| || || || || ||||| | ||| | | | || || ||
Sbjct 343436 GCCATTGGAAACCGTAGACAGGGCCGAGGTCGCCGACTTCGCGATGCGAG-AGGCCAACG 343378
Query 21361 CCGCCAA-AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC-GCGGCGCGACAG 21418
| | ||| || | || || |||| ||||||| || || ||||| || ||| |||
Sbjct 343377 CTGTCAAGGAACTCACGTGAGCCGTTGCCGTCCCAGATCTTAACGCCTGCCTCGC-TCAG 343319
Query 21419 TTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTC 21460
| || |||| ||| |||| || |||||||||| |||
Sbjct 343318 TGCGAGGGAGGATGTGTTGCCCTCGACGAACCACAGCAGCTC 343277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427770598793280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |