Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq431 134 2e-26 >seq431 Length=114165 Score = 134 bits (148), Expect = 2e-26 Identities = 435/672 (65%), Gaps = 14/672 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||| | | ||| || || | | | ||| | ||||| Sbjct 109729 CCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATG 109670 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||| || |||||||| ||||| | || || || | || | | |||||| || || Sbjct 109669 AAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCG 109610 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| ||||| | ||| | | | ||| | ||||| || || | ||| ||| Sbjct 109609 TGGTTCTTGCGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATG 109550 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | ||||| |||||||| || ||||| || | ||| | ||| ||||| || | Sbjct 109549 GCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 109490 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || | | ||| || || | ||| || || |||| |||||| || Sbjct 109489 ACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCG 109430 Query 72274 CTGGCACGAATATTGCTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 ||||||| || | | | | | ||||| || || || ||||| || ||||| | || Sbjct 109429 GTGGCACGGATGC-GATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGC 109371 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 ||| || | || || ||||| ||||| ||| || ||| |||||| | || || Sbjct 109370 GCAAGTCTTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAA 109311 Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452 || |||| ||| || || || || || || | || ||||||||||| || Sbjct 109310 GCAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGT 109251 Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT----AGCTGA--TTCTATATCCCA 72506 || |||| |||| || ||||| || || || ||| | || | |||| Sbjct 109250 GAAGAATTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCA 109191 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 || || || ||||||||||| | ||| ||||| ||||| || | |||||| Sbjct 109190 ------GATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCC 109137 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 | | || | | ||| ||| | ||||| || || || || ||||| | ||| || Sbjct 109136 GTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAA 109077 Query 72627 GTCTCGTTCGTA 72638 ||| || || || Sbjct 109076 GTCGCGGTCATA 109065 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | ||| ||||||||||| | | || || | ||| || || ||||||||| Sbjct 110923 TCCTGGTCGACTGTGAACTGAATGGGCGCAGCAGCAGCCTGCGTGCGCAGGTAGTACATG 110864 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || |||||||| |||| ||| || ||||| || || | |||| | | Sbjct 110863 CCCGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTC 110804 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || |||||||| || | |||||| || || |||||||| || | ||| ||| Sbjct 110803 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAAGGCACCACGGTCGGCA 110744 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 ||||| | | || || || | |||||||||| ||| || || Sbjct 110743 GCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTA 110697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130508747360