Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq431 178 2e-39 seq444 129 9e-25 >seq431 Length=114165 Score = 178 bits (196), Expect = 2e-39 Identities = 349/511 (68%), Gaps = 10/511 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| ||||| || || ||| | ||| ||||| | || ||||||||||| || Sbjct 109518 CAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCCTTGGCACGCCGAT 109577 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| | || ||||||| ||| ||| || |||| || ||| | ||| Sbjct 109578 GTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTGCCCGTGAC 109637 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | || || |||||| | || || | ||||||||| | || || |||| | Sbjct 109638 CTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGAGAAGAACGGGG-- 109695 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || ||| |||| |||| ||||| ||| Sbjct 109696 -ACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGCTACGGCGAGGAG 109754 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || |||||| |||| | |||||||| |||| | || |||| | || | Sbjct 109755 TTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA--TGAAGG 109812 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | |||||| | ||| ||| |||||||| | || | ||| | Sbjct 109813 CCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCTTTCATGC 109872 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||||| ||| || ||||| |||||||| || | ||||||||| ||| Sbjct 109873 TCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCACCATCCGCAGCT 109932 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTC 97350 |||| || |||||||| || | |||||| | | || || ||| || || ||| | Sbjct 109933 CCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCGCGGTCTGCAACC 109992 Query 97351 TGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 |||| ||| || |||||| ||||| || Sbjct 109993 TGGCCTCGCTCGCCTTGCCCACCTTTGTTGA 110023 >seq444 Length=118335 Score = 129 bits (142), Expect = 9e-25 Identities = 315/474 (66%), Gaps = 25/474 (5%) Strand=Plus/Plus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 ||||||| ||||| ||||| || | |||| | | || || || ||||||||||| || Sbjct 61045 GTGGATCAGCGACGAGAAGTCCTCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGA 61104 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| |||||||| ||| || || ||||||| |||||||||||||| || || || Sbjct 61105 GGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTAT 61164 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || ||||| | |||||| | || ||||| || ||||| || ||| ||||| Sbjct 61165 GCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTT 61224 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGT 125629 |||| || || | ||| | | | | || | | ||||| | |||| Sbjct 61225 TGCCTGCCTCCT------CTACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGT 61272 Query 125630 CAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686 ||| ||||| | |||||| || | ||| || || ||||| || ||||| | || Sbjct 61273 CATTGAGGACATTATTGTCGATGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCT 61332 Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 || | || | |||||||||| ||| || ||| ||||||| ||||| || || Sbjct 61333 GCCTTGCGCTCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGC 61392 Query 125747 AGATCGTCTACTGTACGAGTTG--ATTGGC---CGCAAGATTTACAACGCCAAGAATCCC 125801 || ||||| || |||| ||||| |||| | ||||| | ||||| Sbjct 61393 TGACCGTCTCTTG-----GTTGCTCTTGGCAATGACAAGGTCTACAAGTCTTCCAATCCG 61447 Query 125802 TTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || || ||| | ||| || || | || ||||||||||| || |||||| Sbjct 61448 TTCGACTTTATGGAGAACATCTCTCTGGGCGGCAAGACCAACTTCTTTGAGAAG 61501 Score = 109 bits (120), Expect = 8e-19 Identities = 201/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||| | ||| ||| | |||||| Sbjct 60613 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 60672 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||| | || | | || || |||| | || || || Sbjct 60673 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GAGGATGAGAAGTACTTCATCTC 60731 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||||| | |||||||| || | |||||||| || |||||||| || || | || Sbjct 60732 GCACATCCTCGCCTTCTTCGCTGCTTCCGATGGCATTGTCAACGAGAACTTGGTCGAGCG 60791 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||| ||| | ||| | || |||| ||||| || || |||||||||||| Sbjct 60792 CTTCAGCGGCGAG--GTCCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAAATCATG 60849 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 60850 ATGGAGAACATCCACTCAGAGACCTACTCGTTGCTCATCGACACCTACAT 60899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741049603283360