Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq335 102 7e-17 >seq335 Length=682584 Score = 102 bits (112), Expect = 7e-17 Identities = 163/229 (71%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAG 99603 ||||| || || | |||||||| || || ||||||||| |||||||| |||| | Sbjct 403943 CGCACCGTCAGGCATGTGTTGAGGAGGAGGACGCCGCGGTCCGCCCAGGGGGTCAGGAGG 403884 Query 99604 CCG----TGCTGCGGCCGCGGGGTCCCGG---GGAAGTTCTTCTGCACGGCCGCGTAGAT 99656 ||| || || || |||||| || || ||| ||||| | ||| |||| || Sbjct 403883 CCGCCTTTGTTG-GGAGGCGGGGAGAAGGTCGGGTAGTCCTTCTTGAGGGCGACGTACAT 403825 Query 99657 GTTCTGGAGGCTGGGCGGGATCGGAA-CGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGG 99715 ||||| ||| |||||| |||| || | || ||| |||||| |||||||| | Sbjct 403824 GTTCTTGAGCGAGGGCGGCGCCGGAGTCGGAG-GGCGGACGGAGAAGGCGAGGCCGTGAG 403766 Query 99716 CCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 |||| |||| |||||||||| || ||||| |||||||||||||| || Sbjct 403765 CCTGGTTGTGGTTGTGGTAGGGATCTTGGCCGAGGATGACGACCTTAAC 403717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440893490355360