Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq354 105 6e-18
>seq354
Length=249530
Score = 105 bits (116), Expect = 6e-18
Identities = 176/252 (70%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||||||| ||||| ||||| ||||| | | | || || || ||| |||||
Sbjct 201382 ACGCCCGTGCTGCCGAAGCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCCGCGACCTCG 201441
Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
| | |||||| | || ||||||| || ||||| || | ||||| |||
Sbjct 201442 ACGATCTCGGGGGT-GAAGATGCGCTCGACGACGAGCTGGGCGACGCGGTCACCCTCGGC 201500
Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679
||||| || ||| || | || |||||| || | || || | ||||||||||||
Sbjct 201501 GACCTCAAAGTCGGCGTCGGCGTGGTTGAAGAGGAGGACCTTAACCTCGCCGCGGTAGTC 201560
Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739
||||| || || || |||||| ||||||||||| |||| | ||||| |||||||||||
Sbjct 201561 AGCGTCGATGACACCGGCGCCCGTGTCGATGAAGTTCTTGGCAGCCAGACCGGAGCGGGG 201620
Query 5740 AGCCACGCGGCC 5751
|| | ||||||
Sbjct 201621 GGCAATGCGGCC 201632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430048970025632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |