Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq120 96.9 3e-15 seq456 84.2 2e-11 >seq120 Length=409222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||| |||||||||||| || | ||| || ||| || ||| | ||||| ||||| Sbjct 293937 TGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGC 293996 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || || | ||||| || | ||||| || || || ||||| || || || | ||| || Sbjct 293997 TTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGAATCTTC 294056 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 | ||||||| | ||| ||||| | ||||| |||| || || || || ||||| Sbjct 294057 GACTTGACGTTGTCGATGGTGTCTGACGATTCGACCTCAAGGGTAATAGTCTTGCCAGTG 294116 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||||||||| Sbjct 294117 AGGGTCTTAACGAAGATCTGCAT 294139 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || || |||| ||| | |||||||| ||| || || Sbjct 293715 GTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCCA 293774 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || || | | |||||||| ||||||||||| || ||||| | ||| || | |||| Sbjct 293775 GCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 293834 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | | ||||| | ||||| || | ||||| || ||||| || | ||| Sbjct 293835 ACGTTGTCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTC 293894 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 293895 TTGACGAAGATCTGCAT 293911 >seq456 Length=89672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||| | |||||| ||||| || | ||| || ||| | ||| | Sbjct 20943 CGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 20884 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| | ||||| | | ||||| || || || || || || ||| Sbjct 20883 TCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 20824 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | || || |||| ||||| Sbjct 20823 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 20764 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || || || |||||||||||| || Sbjct 20763 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGATT 20725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285394628960