Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq431 342 1e-88
>seq431
Length=114165
Score = 342 bits (378), Expect = 1e-88
Identities = 1165/1791 (65%), Gaps = 42/1791 (2%)
Strand=Plus/Plus
Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTG 363448
|||||| | ||||| |||||| ||| ||||| ||| | | || | |||| |
Sbjct 109091 TTTCGGCTTCAAGACCTTGGAGAGATCATACCTC-CTCAAGCTTGACGGCAAGATTGCCG 109149
Query 363449 AACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508
| | || ||||| ||| | |||||||| || |||||||| | || |||||
Sbjct 109150 AGAGACCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGC 109209
Query 363509 CCGCGATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACA 363567
|| || ||||| || || || | | || | | ||||| ||||| | || |||
Sbjct 109210 GCGTCATCGAAACCTACAACCTGATGTCGAGCAAAT-TCTTCACCCACGCTTCTCCCACA 109268
Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627
| | ||| ||||| || | | | | ||| |||| |||||||| || | | ||||||
Sbjct 109269 CTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAG 109328
Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687
|| || || || |||||||||| ||||| || |||| ||| || | || |||||||
Sbjct 109329 GAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGATCTCCAAGATG 109388
Query 363688 GCAGGCGGAATTGGTGT-ATCGATC--CACAATGTTCGTGC-ACAGAACAGTTACATTCG 363743
|| || || |||||| | | || || | || | ||||| || | | || |||
Sbjct 109389 GCCGGTGGCATTGGTCTCAACGTTCATCGCA---TCCGTGCCACCGG-CTCCTATATTGC 109444
Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803
|||||| || |||||| || | || |||||||| ||||| || |||| |||||
Sbjct 109445 CGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGC 109504
Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863
| ||||||||||||||||| || ||| || || || || || || || |||||
Sbjct 109505 TCGCTACGTCGACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCC 109564
Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923
| || |||||| | || || || | || || || || ||| || || ||||| |
Sbjct 109565 TTGGCACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGT 109624
Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983
||||| ||||| || ||| || || ||| || | |||| || |||||| | || ||
Sbjct 109625 TCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGA 109684
Query 363984 G--GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041
| | | | | | ||| | ||| | ||||| |||| || || || || ||||
Sbjct 109685 GAAGAACG--GGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGC 109742
Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101
| || || || | | || | ||||| ||||| || | ||| |||| ||| |||
Sbjct 109743 TACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAG 109802
Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161
|| || || |||||||| |||| ||||||| | || | |||| ||||| || | |
Sbjct 109803 ACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCA-A 109861
Query 364162 CCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220
|||| | ||| | ||||| ||| | |||||||||| ||||||| || ||||||| ||
Sbjct 109862 CCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCAC 109921
Query 364221 AATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279
| || |||| |||||| || || ||||| || || ||| ||| || || ||| |
Sbjct 109922 CA-TCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCG 109980
Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTT 364333
| || || ||||| || ||| |||| | || | ||||| || || || |
Sbjct 109981 CGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGACTACAACGAGGGCGTCT 110040
Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTA 364393
||| |||| | || | || || ||| | || | |||| || ||| | |
Sbjct 110041 ACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCA 110100
Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCG 364448
||||| || | || || ||| || || || ||| || |||||||| ||
Sbjct 110101 TCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACATGCGTCACCG 110155
Query 364449 CCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATT 364508
||| |||||||| ||||| ||||| || ||||| | || || || ||| | ||
Sbjct 110156 CCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTGCGCATGCCCTT 110215
Query 364509 TGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568
|| || ||||| ||||| | ||||| ||| |||||||||| || || || || ||
Sbjct 110216 CGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACGCTGC 110275
Query 364569 AATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627
| || ||| ||| | |||| || |||| ||| || || ||||| |
Sbjct 110276 CCTCACCATGTCG-GTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTT 110334
Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGAT 364687
|||| | || ||||| | |||||| || | |||||||||| ||| || | | |
Sbjct 110335 CCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCT 110394
Query 364688 GGAACTGGGATACGCTACGTTCCA--ACGTTAAGAAGCATGGTACTCGCAACTCCCTCGT 364745
|| |||||| ||||| | | | | ||| |||| ||| |||||||| || |
Sbjct 110395 GGGACTGGG--ACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCT 110452
Query 364746 TACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGA 364805
||||||||||| || ||| || | |||||| | || |||||||||||||| ||
Sbjct 110453 CGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 110512
Query 364806 ACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA 364865
|| | || ||| | || || || |||||| | || || || | ||| || ||
Sbjct 110513 GCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAA 110572
Query 364866 TAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA 364925
| || | ||||| ||| |||| || ||||| || ||||||||||
Sbjct 110573 CCCTTGGCTCTTGAAGGACCTTGTCGACATGGGTTTGTGGTCCGATGCCATGAAGAACCG 110632
Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985
||||| |||| || ||||| | |||||||| || | || || | ||| |
Sbjct 110633 CATCATTGCCGAGAACGGTTCGATCCAGAACATCCCCAACATCCCTACTGAGGTCAAGGC 110692
Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCG 365045
| ||||| || || |||||||| || ||| || || | | ||||| ||||| ||
Sbjct 110693 CCTGTACAAGACTGTTTGGGAAATCTCTCAGCGTACCGTCGTGCAGATGGCTGCCGACCG 110752
Query 365046 CGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGC 365105
||||| || || ||| |||||| | ||| | ||||| | || ||| |
Sbjct 110753 TGGTGCCTTCATTGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGG 110812
Query 365106 CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
||| | || |||||| ||| ||| ||||| |||||| ||||| ||
Sbjct 110813 CAAAATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTGAAGACGGG 110863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303336299610152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |