Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq431 342 1e-88 >seq431 Length=114165 Score = 342 bits (378), Expect = 1e-88 Identities = 1165/1791 (65%), Gaps = 42/1791 (2%) Strand=Plus/Plus Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTG 363448 |||||| | ||||| |||||| ||| ||||| ||| | | || | |||| | Sbjct 109091 TTTCGGCTTCAAGACCTTGGAGAGATCATACCTC-CTCAAGCTTGACGGCAAGATTGCCG 109149 Query 363449 AACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508 | | || ||||| ||| | |||||||| || |||||||| | || ||||| Sbjct 109150 AGAGACCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGACGACGTTGAGC 109209 Query 363509 CCGCGATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || || ||||| || || || | | || | | ||||| ||||| | || ||| Sbjct 109210 GCGTCATCGAAACCTACAACCTGATGTCGAGCAAAT-TCTTCACCCACGCTTCTCCCACA 109268 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 | | ||| ||||| || | | | | ||| |||| |||||||| || | | |||||| Sbjct 109269 CTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTCGACATGAAG 109328 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 || || || || |||||||||| ||||| || |||| ||| || | || ||||||| Sbjct 109329 GAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGATCTCCAAGATG 109388 Query 363688 GCAGGCGGAATTGGTGT-ATCGATC--CACAATGTTCGTGC-ACAGAACAGTTACATTCG 363743 || || || |||||| | | || || | || | ||||| || | | || ||| Sbjct 109389 GCCGGTGGCATTGGTCTCAACGTTCATCGCA---TCCGTGCCACCGG-CTCCTATATTGC 109444 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 |||||| || |||||| || | || |||||||| ||||| || |||| ||||| Sbjct 109445 CGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAACACTGC 109504 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | ||||||||||||||||| || ||| || || || || || || || ||||| Sbjct 109505 TCGCTACGTCGACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCTTGAGCC 109564 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 | || |||||| | || || || | || || || || ||| || || ||||| | Sbjct 109565 TTGGCACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGT 109624 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 ||||| ||||| || ||| || || ||| || | |||| || |||||| | || || Sbjct 109625 TCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAGGGTAGA 109684 Query 363984 G--GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 | | | | | | ||| | ||| | ||||| |||| || || || || |||| Sbjct 109685 GAAGAACG--GGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGACTGC 109742 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 | || || || | | || | ||||| ||||| || | ||| |||| ||| ||| Sbjct 109743 TACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAG 109802 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || || || |||||||| |||| ||||||| | || | |||| ||||| || | | Sbjct 109803 ACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCA-A 109861 Query 364162 CCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 |||| | ||| | ||||| ||| | |||||||||| ||||||| || ||||||| || Sbjct 109862 CCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGGCAC 109921 Query 364221 AATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | || |||| |||||| || || ||||| || || ||| ||| || || ||| | Sbjct 109922 CA-TCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGTCG 109980 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTT 364333 | || || ||||| || ||| |||| | || | ||||| || || || | Sbjct 109981 CGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGTTGACTACAACGAGGGCGTCT 110040 Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTA 364393 ||| |||| | || | || || ||| | || | |||| || ||| | | Sbjct 110041 ACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTTGTTGTCCGCAACCTGAACAGAATCA 110100 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCG 364448 ||||| || | || || ||| || || || ||| || |||||||| || Sbjct 110101 TCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGC-----AACATGCGTCACCG 110155 Query 364449 CCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATT 364508 ||| |||||||| ||||| ||||| || ||||| | || || || ||| | || Sbjct 110156 CCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTGCGCATGCCCTT 110215 Query 364509 TGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGC 364568 || || ||||| ||||| | ||||| ||| |||||||||| || || || || || Sbjct 110216 CGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTACCACGCTGC 110275 Query 364569 AATGACTGCTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627 | || ||| ||| | |||| || |||| ||| || || ||||| | Sbjct 110276 CCTCACCATGTCG-GTGCAGCTGGCCAAGGAGGAGGGCCCCTACCAGACGTACGAGGGTT 110334 Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGAT 364687 |||| | || ||||| | |||||| || | |||||||||| ||| || | | | Sbjct 110335 CCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCT 110394 Query 364688 GGAACTGGGATACGCTACGTTCCA--ACGTTAAGAAGCATGGTACTCGCAACTCCCTCGT 364745 || |||||| ||||| | | | | ||| |||| ||| |||||||| || | Sbjct 110395 GGGACTGGG--ACGCTTTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCT 110452 Query 364746 TACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGA 364805 ||||||||||| || ||| || | |||||| | || |||||||||||||| || Sbjct 110453 CGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGA 110512 Query 364806 ACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA 364865 || | || ||| | || || || |||||| | || || || | ||| || || Sbjct 110513 GCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTCCAGGTCGTCAA 110572 Query 364866 TAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA 364925 | || | ||||| ||| |||| || ||||| || |||||||||| Sbjct 110573 CCCTTGGCTCTTGAAGGACCTTGTCGACATGGGTTTGTGGTCCGATGCCATGAAGAACCG 110632 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985 ||||| |||| || ||||| | |||||||| || | || || | ||| | Sbjct 110633 CATCATTGCCGAGAACGGTTCGATCCAGAACATCCCCAACATCCCTACTGAGGTCAAGGC 110692 Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCG 365045 | ||||| || || |||||||| || ||| || || | | ||||| ||||| || Sbjct 110693 CCTGTACAAGACTGTTTGGGAAATCTCTCAGCGTACCGTCGTGCAGATGGCTGCCGACCG 110752 Query 365046 CGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGC 365105 ||||| || || ||| |||||| | ||| | ||||| | || ||| | Sbjct 110753 TGGTGCCTTCATTGACCAGTCGCAGTCGCTCAACATTCACATGAAGGACCCGACCATGGG 110812 Query 365106 CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| | || |||||| ||| ||| ||||| |||||| ||||| || Sbjct 110813 CAAAATCACCAGCATGCACTTCGCCGGCTGGAAGCTCGGTCTGAAGACGGG 110863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303336299610152