Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq120 89.7 4e-13
>seq120
Length=409222
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || || | || ||||| |||||||| || ||||||||||| |
Sbjct 293685 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 293744
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | |||||||| || ||||| || |||| || ||||| || || |||
Sbjct 293745 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 293804
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| ||| | | ||| || | | | | ||||| | |||
Sbjct 293805 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 293864
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||| || |||||||||| || ||||| || ||||||||
Sbjct 293865 TCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| || || || |||||||| || ||||||||||||| |
Sbjct 294141 CCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 294200
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| | || || || || | || | ||||| ||||| ||
Sbjct 294201 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 294260
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| ||| | |||||| | | | | || ||| || |||
Sbjct 294261 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCGATGGTATCGGAGGACTCGACC 294320
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGAC 16923
|| | ||||||||| || ||||| ||||| |||||
Sbjct 294321 TCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 294355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405082885257640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |