Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq944 136 3e-27 seq276 107 1e-18 seq57 96.9 2e-15 >seq944 Length=1309 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 862 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 921 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 922 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 956 >seq276 Length=420336 Score = 107 bits (118), Expect = 1e-18 Identities = 200/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 ||| || ||||| |||||||| ||| | ||| | ||||| ||||||| || || || Sbjct 46560 GGATGCTTTCTATCGCTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAAGGCAA 46619 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || ||||| | |||||| || || ||| || | |||| || || | Sbjct 46620 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTTGCTCAGTCCCTCGCCCGTCCCGG 46679 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||| | || || ||||| | ||| || || || ||||| | | || | | Sbjct 46680 CGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 46739 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | ||||| || || || | ||||||||||||||| || || Sbjct 46740 CGACGACCGCTGGATCATCAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 46799 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||| || |||||| || || || | | ||| | ||||| |||||||| Sbjct 46800 CGGCTTCATCAACAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 46853 >seq57 Length=454680 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||||||||| |||||||||| |||||| ||||||||| ||||| | ||| |||| Sbjct 259419 AAGCCCGTTCCGTTGGCTGTGGCTTCGCTGGATAGTAGAGAGGGGCAATAGGAATTTCGT 259478 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGATAT 25994 | |||| | ||||||| ||| ||||||||||| || || Sbjct 259479 TGATCCATGCATGCGCTTCATTAATTAGATGAAGAGAT 259516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942970872916