Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq944 136 3e-27
seq276 107 1e-18
seq57 96.9 2e-15
>seq944
Length=1309
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 862 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 921
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 922 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 956
>seq276
Length=420336
Score = 107 bits (118), Expect = 1e-18
Identities = 200/294 (68%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253
||| || ||||| |||||||| ||| | ||| | ||||| ||||||| || || ||
Sbjct 46560 GGATGCTTTCTATCGCTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAAGGCAA 46619
Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313
||| || || ||||| | |||||| || || ||| || | |||| || || |
Sbjct 46620 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTTGCTCAGTCCCTCGCCCGTCCCGG 46679
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| |||| | || || ||||| | ||| || || || ||||| | | || | |
Sbjct 46680 CGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 46739
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| | ||||| || || || | ||||||||||||||| || ||
Sbjct 46740 CGACGACCGCTGGATCATCAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 46799
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||||| || |||||| || || || | | ||| | ||||| ||||||||
Sbjct 46800 CGGCTTCATCAACAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 46853
>seq57
Length=454680
Score = 96.9 bits (106), Expect = 2e-15
Identities = 80/98 (82%), Gaps = 5/98 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956
||||||||||| |||||||||| |||||| ||||||||| ||||| | ||| ||||
Sbjct 259419 AAGCCCGTTCCGTTGGCTGTGGCTTCGCTGGATAGTAGAGAGGGGCAATAGGAATTTCGT 259478
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGATAT 25994
| |||| | ||||||| ||| ||||||||||| || ||
Sbjct 259479 TGATCCATGCATGCGCTTCATTAATTAGATGAAGAGAT 259516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334942970872916
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |