Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq120 118 9e-22
seq456 105 6e-18
seq154 95.1 1e-14
>seq120
Length=409222
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| ||||| || ||| |||| || || || || | |
Sbjct 293911 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACACTAGAGGTCGAGTCTTCG 293852
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || ||||| ||||||||||||||||| ||||||||
Sbjct 293851 GACACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 293792
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || ||||| ||||| |||||| ||||||| | || ||||||
Sbjct 293791 CAGCGTCTCATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCTTGAGTGACTACAAC 293732
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | || | || | || |||| ||||||
Sbjct 293731 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTGCGTGGAGGT 293684
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || ||||| || | || || || || | || ||||| || ||| | |
Sbjct 294139 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCA 294080
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || |||||||| ||||||||||| || ||||| ||
Sbjct 294079 GACACCATCGACAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATCCCCCCCGACCAG 294020
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || || ||||| ||| | ||||| ||||||| | ||||| ||||||
Sbjct 294019 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAAC 293960
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || ||||| || | ||| | || | || | |||||||||
Sbjct 293959 ATTCAGAAGGAATCTACTCTGCATCTCGTCCTTCGCCTCCGCGGAGGT 293912
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| || || || |||||||| | ||| | | ||
Sbjct 294343 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGTCC 294284
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| ||||| || || || | || || || || ||
Sbjct 294283 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTAAG 294224
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| ||||||| | ||||| |||||||| || || || || ||| | ||
Sbjct 294223 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 294164
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| || |||| | || || |||
Sbjct 294163 TTGGTGCTGCGTCTCCGTGGTGGT 294140
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || | || ||||| || || || |||||||| | ||| | | ||
Sbjct 294627 ACCGGCAAGACCATTACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTGAAGTCT 294568
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| ||||| || || || | || || || || ||
Sbjct 294567 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCTGGTAAG 294508
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| ||||||| | ||||| |||||||| || || || || ||| | ||
Sbjct 294507 CAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCAC 294448
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||| | || | || || |||
Sbjct 294447 TTGGTTCTCCGCCTTCGTGGTGGT 294424
>seq456
Length=89672
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || ||||| || |||| ||||| ||||| | ||
Sbjct 20729 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 20788
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || || ||||||||||| || || || || ||
Sbjct 20789 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 20848
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || || || ||| | ||||| ||||||| ||||||| ||||||
Sbjct 20849 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 20908
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || || || | || || || |||| | || || |||
Sbjct 20909 ATCCAGAAGGAGTCTACTCTTCACTTGGTCCTGCGCCTCCGTGGTGGT 20956
>seq154
Length=370784
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || ||||| || | || ||||| || || || | || || |
Sbjct 211048 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 211107
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| ||||| ||||| || || || |
Sbjct 211108 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTT 211167
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || |||||||| ||| | ||||| ||||||| ||||||| |||||||| || ||
Sbjct 211168 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 211227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419722700409340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |