Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq444 131 3e-25 seq317 113 9e-20 seq32 109 1e-18 seq460 87.8 4e-12 >seq444 Length=118335 Score = 131 bits (144), Expect = 3e-25 Identities = 311/465 (67%), Gaps = 10/465 (2%) Strand=Plus/Minus Query 251524 TTCATCACACCTGGACGT-TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCC 251582 ||||| ||||| || | | || || || | ||||| || ||||| || | |||||| Sbjct 61536 TTCATAACACC-GGCCTTCTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCC 61478 Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642 |||||||||| |||||| |||||||| || || | | ||||| |||| || Sbjct 61477 GCCCAGAGAGATGTTCTCCATAAAGTCGAACGGATTGGAAGACTTGTAGACCTTGTCATT 61418 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGA 251702 |||||| || || |||| ||||| || || ||||| | ||||| |||||| | || Sbjct 61417 GCCAAGAGCAACCAAGAGACGGTCAGCGACGAACTCAATGTACTGCTTCATCAGGTTGGA 61358 Query 251703 GTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAAC 251762 ||||||||| | || | ||||| | ||||| | ||| |||| ||| | || Sbjct 61357 GTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTGCTCGATCTTGAC 61298 Query 251763 TGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTG 251818 || || | | ||| ||| | ||||| | | | | | ||||| || | | Sbjct 61297 AGCATCGACAATAATGTCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAG 61242 Query 251819 AGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGG 251878 |||| ||||| | |||| | ||| |||||||| || ||| ||||| |||||||| Sbjct 61241 AGTAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGG 61182 Query 251879 ACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATC 251938 | | ||| |||||||| | ||||| ||| ||||||||||||| | | |||| | Sbjct 61181 AGAAGGTCAGACCAGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCAC 61122 Query 251939 CAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCT 251983 | ||| | | ||||||||| | | ||||| ||||||| Sbjct 61121 CGCTGAAGAAGATACCCTCGACGGCGGCGAAGGCAACGAGGCGCT 61077 >seq317 Length=84703 Score = 113 bits (124), Expect = 9e-20 Identities = 444/682 (65%), Gaps = 31/682 (5%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || ||||||||||| ||||| ||||||||||||||||| | | || ||||| || | Sbjct 58705 GTCGGTTCTCTGTCTGGTGGATGGAAGATGAAGCTGGCTTTGGCCCGTGCCATGCTCAAG 58646 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| ||||| ||||| || || || ||||||||| ||||| ||||| | ||| Sbjct 58645 GGCGCCGACGTCCTGCTGCTCGACGAACCTACCAACCACTTGGACGTTGCCAACATTGCC 58586 Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | ||||||| | ||| ||| ||| || | | || || || || Sbjct 58585 TGGCTCGAGACCTACCTCAAGACCCACCCTG-AGA---TTACCAGTTTGATCGTTTCCCA 58530 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931 ||||||||||||||| || ||| | | |||| ||||| |||| || ||| Sbjct 58529 CGACTCTGGCTTCCTCGACAACGTCACTACCGACATCTACCACTACGAGCCCAACAAGAA 58470 Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCC 279989 ||| | | | ||||||||| | || || ||| ||||| ||||| Sbjct 58469 GCTGGCGTGCTATAAGGGCAACCTGGCCAACTT--TGTCAAGCTCCGCCCCGAGGCCAAG 58412 Query 279990 GCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTG 280049 |||||| || | || | | | | | ||||| | || |||| ||| Sbjct 58411 AGCTACTACACGCTCTCTGCTTCCCAGGTCCAATTCAAGTTCCC-GCCCCCGGGTATCTT 58353 Query 280050 GA-GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCT 280106 || || ||| || | || || ||||| | | || |||||||| Sbjct 58352 GACCGGTGTCAAGTCTTTGACCCGTGCCATCATCCGCATGACC--AACGTCTCCTACCAA 58295 Query 280107 TATCCCAATGGCCCCAA-CAT--CTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCA 280163 || ||||| | |||||| | | | | ||| ||||| || ||| || || || || Sbjct 58294 TACCCCAAGGCCCCCAAGCCTTCCCTGAGCGATGTCACCTGCCAGCTTACTCTGTCGTC- 58236 Query 280164 CGGATTGG-TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGAC 280222 | || ||| | || || ||||| ||||| || ||||||||||| ||||| |||| || Sbjct 58235 CAGAGTGGCCATTATCGGCCCCAACGGTGCTGGCAAGTCTACCCTCATCAAGATCCTTAC 58176 Query 280223 TGGCGAG---ACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGG 280278 ||| ||| | || |||| ||| | | | |||||| |||||| |||| || | Sbjct 58175 TGGTGAGGTCATCCCTACCAC----CGGTAAGGTAGAGAAGCACCCCAACCTGCGTATCG 58120 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 |||| || ||||||||| || | ||| | |||| || || || | ||| || |||| Sbjct 58119 GTTACATCAAGCAGCACGCTCTCGAGCACGTTGAGATGCATCTCGAGAAGACGCCCAACC 58060 Query 280339 AATACATTCAGTGGCGCTATGC 280360 | ||| | |||||||| || || Sbjct 58059 AGTACCTCCAGTGGCGTTACGC 58038 >seq32 Length=244552 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | ||||||||| ||||| ||||| || ||||| ||||| ||||| || || Sbjct 220458 CTCCCGTATCGCTGTCATTGGTCCCAACGGTGCTGGCAAGTCCACCCTTATCAACGTTCT 220399 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | |||| |||| | | |||| ||||| || || || Sbjct 220398 CACTGGTGAGCTCGTCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 220339 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||||||| ||||||||||||| ||| || | Sbjct 220338 CTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCTGA 220279 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| || |||| || Sbjct 220278 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 220228 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| ||||| || |||| ||||| ||||| ||| Sbjct 221273 GGTGAGGATCTTTGCAACTGCACCTTCTCTCTCGCCTACGGTGCCAAGATCCTGCTCAAC 221214 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 221213 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 221154 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| || || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 221153 GGCAAGTCTACCCTCATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 221095 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 221094 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 221053 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| ||| ||||| | | ||||| ||||| |||||||| || || | Sbjct 219901 CCAACTTCGGTCTTGACGCCGAGCTGGTTTCCCACTCCCGCATGCGCGGTCTGTCCGGTG 219842 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | || | | || ||||| ||||| | |||||| ||||||| Sbjct 219841 GTCAGCGTGTCAAGGTCGTTCTTGCTGCCTGCTCT-TGGCAGCGTCCTCACTTGATCGTC 219783 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||||||||||||||| || ||||| || ||| || || ||| Sbjct 219782 CTCGACGAGCCTACCAACTACCTCGACCGTGACTCCCTCGGTGCCCTG 219735 >seq460 Length=231403 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 106916 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 106975 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 106976 CCCACGTCGGGCTCAAATC-CCGTC 106999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027823156751276