Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq456 176 8e-39
seq120 152 9e-32
seq32 149 1e-30
seq451 107 4e-18
seq317 107 4e-18
seq444 91.5 3e-13
>seq456
Length=89672
Score = 176 bits (194), Expect = 8e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||||||| || || ||||| || |||||||| || ||||||
Sbjct 20955 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 20896
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || || | || ||||| || ||
Sbjct 20895 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 20836
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 20835 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 20776
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || |||||||||||||||||||| |||||||| ||
Sbjct 20775 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 20726
>seq120
Length=409222
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| ||||| | || | || || || || || || || ||||| || |||||
Sbjct 293913 CCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAC 293972
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || | | || |||||||| ||
Sbjct 293973 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 294032
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | ||||||| ||||||||||||| ||||| ||
Sbjct 294033 ATACCCTCCTTATCTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 294092
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| || || || || ||||||||||| ||||| ||||||||
Sbjct 294093 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | ||| ||||| ||||| || |||||||| || ||
Sbjct 293685 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 293744
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || |||||||| || ||||| ||||| | || || ||||| |||
Sbjct 293745 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 293804
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| | ||||||| || || ||||| | || || ||
Sbjct 293805 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 293864
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || ||||| || | ||||||||||| ||||||||
Sbjct 293865 TCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
>seq32
Length=244552
Score = 149 bits (164), Expect = 1e-30
Identities = 666/1038 (64%), Gaps = 44/1038 (4%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||||||| ||||||||||||| || || ||| ||||||
Sbjct 220264 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 220323
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 220324 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 220383
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| || ||||| || ||||| || || | |||||| ||||| ||||| |||||
Sbjct 220384 ACGAGCTCACCAGTGAGAACGTTGATAAGGGTGGACTTGCCAGCACCGTTGGGACCAATG 220443
Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGC 225218
|| | || ||||| || | ||| ||| || | || ||| ||||| ||||
Sbjct 220444 ACAGCGATACGGGAGCCGAGAGAGCA--CTGGAAGGAGATGTC-CTG--GATCTG-GGGC 220497
Query 225219 ---CAGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265
| | | |||| |||| || | ||||||| |||||| |
Sbjct 220498 TTACTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTG 220551
Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325
|||||| | | |||||| ||||| |||||||||||||| ||| || | | |
Sbjct 220552 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAG 220611
Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385
|| | || ||||||||||| || |||| ||| ||||| | |||||
Sbjct 220612 TCGCTGAGCTCGTAGTAAGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTGAGGTTA 220671
Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444
|| ||| | ||||||||| | || |||| || || || ||| | ||| ||
Sbjct 220672 CCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTT 220727
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503
||| |||||| ||||||||||||| || ||||| || | || | | || | | ||
Sbjct 220728 GTCGAGGAAGGCAGAGTCGTGGGAGACGATGATAGAAGTGCAGG---GGGAGTTC-TGGA 220783
Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563
||| | |||||| ||||| | ||||||| |||||| || || ||||| ||||
Sbjct 220784 GGTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAA 220843
Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623
||||||| || | | | || || ||| || |||| |||||||| ||||| || |
Sbjct 220844 GCAGGATATCGGGAGCTTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 220903
Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683
| || |||| ||| | | | | | | ||| |||||| |||| |||
Sbjct 220904 CAGAGAGGGCAGAGATCTCACCCTTGATCATGCCGTCGGTGAAGCCGAACTCGTTCAGCT 220963
Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAG--CGGCAACGTTGGGGTCGGACGAGAG 225738
| || || | | || ||||| || ||| | ||| | | | | | | |
Sbjct 220964 TGGCCTCGACATCGGCCT-GGGAGGTCT-CGACGCCAGCATCCTGGAGCTTCTTCATGGT 221021
Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798
| ||| |||||| || | | ||| | ||||| |||||| || ||| | || ||
Sbjct 221022 CCACTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGT 221081
Query 225799 CCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858
| || || || | |||||| ||||| | ||| | || || || || | ||
Sbjct 221082 CTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAG 221141
Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918
|||| |||||| | |||||||||||| || ||||| | | || |||||||
Sbjct 221142 GGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTGAGACG 221201
Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978
|||| | || ||| || ||||||||| |||| ||||| || ||||| ||| | |||
Sbjct 221202 GAGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGAGAGAAGGTGCAGTTGCA 221261
Query 225979 CAGGTCCTCACCCTCCTC 225996
|| ||||||||||||||
Sbjct 221262 AAGATCCTCACCCTCCTC 221279
>seq451
Length=32323
Score = 107 bits (118), Expect = 4e-18
Identities = 240/358 (67%), Gaps = 2/358 (1%)
Strand=Plus/Minus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| ||||| || || ||| ||| ||||||||||| || ||||||| || || |
Sbjct 11539 CCAGTGTGAACATCTTCGGAGAAACCAATCTCAGCCGTCCCGCCGACGTCGACGAGAGAT 11480
Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACA-CGGCGCCGCCAAAGGTGTCGCGAGA 59415
|| |||||||||| |||| | || ||||| | | ||| || | | || |||
Sbjct 11479 TCGCGGCGGTAGAGTGCGTTACTTCCAACGCAAATAGACGCACCCCATCG-GTTGCGGTT 11421
Query 59416 AACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGT 59475
||||||| | |||||| ||||| ||||| || || || | | |||||||| ||
Sbjct 11420 GACCTGGACAACACGGTAAAACAGCTCCTGCGTGGCACCGGCCCCCTGTTCAACCCACGT 11361
Query 59476 CTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATG 59535
|||||| | || |||| ||||||| |||| |||| || |||| |||||
Sbjct 11360 CTGGTCATCGGTGACACGGAAGTACTGGGGACTCTGAACAAGGGCCGTCTTATCGTCACC 11301
Query 59536 GGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGAA 59595
| | ||| | ||||||||| |||| |||||||| || || || || |||||
Sbjct 11300 CAAGTGTTCCACCATCAACTCCTTGAGGAAGTCGGGGCGCGGGCAAAAATCCGCGTCGAA 11241
Query 59596 GATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCTTT 59653
||||| |||||| | | ||||||| ||| | | |||||||| ||||||
Sbjct 11240 AATGGCGAAGAAGTCTCCGTTGGTCTTGGCGAACGTCCATCTCAGGTTGCCCGCCTTT 11183
>seq317
Length=84703
Score = 107 bits (118), Expect = 4e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| |||||||||||||||||||| || || | | | | | || ||||||
Sbjct 58511 GTCGAGGAAGCCAGAGTCGTGGGAAACGATCAAACTGGTAATCTCAGGGTGGGTCTTGAG 58570
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| || |||||| || | |||| ||||||| |||||| ||||||||||| || ||
Sbjct 58571 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAG 58630
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
||||| ||| || | |||| ||||| || | | || ||||||||| ||||| || ||
Sbjct 58631 CAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAAAGCCAGCTTCATCTTCCATCCACC 58690
Query 225625 GGACAGGGAGCCGA 225638
||||| || ||||
Sbjct 58691 AGACAGAGAACCGA 58704
>seq444
Length=118335
Score = 91.5 bits (100), Expect = 3e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681
|| |||||| | || ||||||||| | || |||||| ||||||||||| ||||||
Sbjct 60783 CAAGTTCTCGTTGACAATGCCATCGGAAGCAGCGAAGAAGGCGAGGATGTGCGAGATGAA 60724
Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741
|| |||||| ||||| | || | |||||| | ||||| | || | |
Sbjct 60723 GTACTTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAAT 60664
Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786
|||||| |||||||||||| ||| | |||||||||||||||||
Sbjct 60663 CTCCTCGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACATCTG 60619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921610464989920
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