Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq456 176 8e-39 seq120 152 9e-32 seq32 149 1e-30 seq451 107 4e-18 seq317 107 4e-18 seq444 91.5 3e-13 >seq456 Length=89672 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || || ||||| || |||||||| || |||||| Sbjct 20955 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 20896 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 20895 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 20836 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 20835 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 20776 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||||||||| |||||||| || Sbjct 20775 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 20726 >seq120 Length=409222 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | || | || || || || || || || ||||| || ||||| Sbjct 293913 CCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAC 293972 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || |||||||| || Sbjct 293973 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 294032 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| | ||||||| ||||||||||||| ||||| || Sbjct 294033 ATACCCTCCTTATCTTGAATCTTCGACTTGACGTTGTCGATGGTGTCTGACGATTCGACC 294092 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || ||||||||||| ||||| |||||||| Sbjct 294093 TCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| ||||| ||||| || |||||||| || || Sbjct 293685 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 293744 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || |||||||| || ||||| ||||| | || || ||||| ||| Sbjct 293745 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 293804 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| || || ||||| | || || || Sbjct 293805 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGACC 293864 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || | ||||||||||| |||||||| Sbjct 293865 TCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911 >seq32 Length=244552 Score = 149 bits (164), Expect = 1e-30 Identities = 666/1038 (64%), Gaps = 44/1038 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 220264 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 220323 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 220324 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 220383 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || ||||| || ||||| || || | |||||| ||||| ||||| ||||| Sbjct 220384 ACGAGCTCACCAGTGAGAACGTTGATAAGGGTGGACTTGCCAGCACCGTTGGGACCAATG 220443 Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGC 225218 || | || ||||| || | ||| ||| || | || ||| ||||| |||| Sbjct 220444 ACAGCGATACGGGAGCCGAGAGAGCA--CTGGAAGGAGATGTC-CTG--GATCTG-GGGC 220497 Query 225219 ---CAGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265 | | | |||| |||| || | ||||||| |||||| | Sbjct 220498 TTACTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAG------GATGGCCTTG 220551 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||||||||| ||| || | | | Sbjct 220552 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAG 220611 Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 || | || ||||||||||| || |||| ||| ||||| | ||||| Sbjct 220612 TCGCTGAGCTCGTAGTAAGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTGAGGTTA 220671 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || ||| | ||||||||| | || |||| || || || ||| | ||| || Sbjct 220672 CCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTT 220727 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503 ||| |||||| ||||||||||||| || ||||| || | || | | || | | || Sbjct 220728 GTCGAGGAAGGCAGAGTCGTGGGAGACGATGATAGAAGTGCAGG---GGGAGTTC-TGGA 220783 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| | |||||| ||||| | ||||||| |||||| || || ||||| |||| Sbjct 220784 GGTACTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGAA 220843 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 ||||||| || | | | || || ||| || |||| |||||||| ||||| || | Sbjct 220844 GCAGGATATCGGGAGCTTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 220903 Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683 | || |||| ||| | | | | | | ||| |||||| |||| ||| Sbjct 220904 CAGAGAGGGCAGAGATCTCACCCTTGATCATGCCGTCGGTGAAGCCGAACTCGTTCAGCT 220963 Query 225684 T---CTGGATAATGCGCTCGGGAGAGCTGCGAG--CGGCAACGTTGGGGTCGGACGAGAG 225738 | || || | | || ||||| || ||| | ||| | | | | | | | Sbjct 220964 TGGCCTCGACATCGGCCT-GGGAGGTCT-CGACGCCAGCATCCTGGAGCTTCTTCATGGT 221021 Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798 | ||| |||||| || | | ||| | ||||| |||||| || ||| | || || Sbjct 221022 CCACTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCTCGACGAAGACGGT 221081 Query 225799 CCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858 | || || || | |||||| ||||| | ||| | || || || || | || Sbjct 221082 CTTGACCTCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAG 221141 Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918 |||| |||||| | |||||||||||| || ||||| | | || ||||||| Sbjct 221142 GGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTGAGACG 221201 Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978 |||| | || ||| || ||||||||| |||| ||||| || ||||| ||| | ||| Sbjct 221202 GAGGTGAGTCTGGTTGAGCAGGATCTTGGCACCGTAGGCGAGAGAGAAGGTGCAGTTGCA 221261 Query 225979 CAGGTCCTCACCCTCCTC 225996 || |||||||||||||| Sbjct 221262 AAGATCCTCACCCTCCTC 221279 >seq451 Length=32323 Score = 107 bits (118), Expect = 4e-18 Identities = 240/358 (67%), Gaps = 2/358 (1%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || ||||| || || ||| ||| ||||||||||| || ||||||| || || | Sbjct 11539 CCAGTGTGAACATCTTCGGAGAAACCAATCTCAGCCGTCCCGCCGACGTCGACGAGAGAT 11480 Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACA-CGGCGCCGCCAAAGGTGTCGCGAGA 59415 || |||||||||| |||| | || ||||| | | ||| || | | || ||| Sbjct 11479 TCGCGGCGGTAGAGTGCGTTACTTCCAACGCAAATAGACGCACCCCATCG-GTTGCGGTT 11421 Query 59416 AACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGT 59475 ||||||| | |||||| ||||| ||||| || || || | | |||||||| || Sbjct 11420 GACCTGGACAACACGGTAAAACAGCTCCTGCGTGGCACCGGCCCCCTGTTCAACCCACGT 11361 Query 59476 CTGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATG 59535 |||||| | || |||| ||||||| |||| |||| || |||| ||||| Sbjct 11360 CTGGTCATCGGTGACACGGAAGTACTGGGGACTCTGAACAAGGGCCGTCTTATCGTCACC 11301 Query 59536 GGAAAAGTAGGGCATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGAA 59595 | | ||| | ||||||||| |||| |||||||| || || || || ||||| Sbjct 11300 CAAGTGTTCCACCATCAACTCCTTGAGGAAGTCGGGGCGCGGGCAAAAATCCGCGTCGAA 11241 Query 59596 GATGGCAAAGAAGGGGGCAGTTGTCTTGGTGAATGCGTTGCGAAGGTTGCCAGCCTTT 59653 ||||| |||||| | | ||||||| ||| | | |||||||| |||||| Sbjct 11240 AATGGCGAAGAAGTCTCCGTTGGTCTTGGCGAACGTCCATCTCAGGTTGCCCGCCTTT 11183 >seq317 Length=84703 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| |||||||||||||||||||| || || | | | | | || |||||| Sbjct 58511 GTCGAGGAAGCCAGAGTCGTGGGAAACGATCAAACTGGTAATCTCAGGGTGGGTCTTGAG 58570 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || || |||||| || | |||| ||||||| |||||| ||||||||||| || || Sbjct 58571 GTAGGTCTCGAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAG 58630 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||||| ||| || | |||| ||||| || | | || ||||||||| ||||| || || Sbjct 58631 CAGGACGTCGGCGCCCTTGAGCATGGCACGGGCCAAAGCCAGCTTCATCTTCCATCCACC 58690 Query 225625 GGACAGGGAGCCGA 225638 ||||| || |||| Sbjct 58691 AGACAGAGAACCGA 58704 >seq444 Length=118335 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 || |||||| | || ||||||||| | || |||||| ||||||||||| |||||| Sbjct 60783 CAAGTTCTCGTTGACAATGCCATCGGAAGCAGCGAAGAAGGCGAGGATGTGCGAGATGAA 60724 Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741 || |||||| ||||| | || | |||||| | ||||| | || | | Sbjct 60723 GTACTTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAAT 60664 Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 |||||| |||||||||||| ||| | ||||||||||||||||| Sbjct 60663 CTCCTCGGCGGTCCAGAAAGAGGCCTCAGCCTTCTTGTACATCTG 60619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921610464989920