Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq120 105 7e-18
seq154 86.0 6e-12
>seq120
Length=409222
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || || |||| |||||| || || || |||||||| ||
Sbjct 293684 ACCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACT 293743
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| | || || | ||||||||| || ||||||| |||||||| ||||||||
Sbjct 293744 CAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGG 293803
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| || || | || || | || ||
Sbjct 293804 AATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTGTCCGAAGACTCGAC 293863
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| || | ||||| ||||||||||| || ||||| || |||||
Sbjct 293864 CTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||| || ||||| | || ||||| || ||||||||||| || |
Sbjct 293912 ACCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGGA 293971
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||| |||||||||||||| || | || | |||||||||||||| ||
Sbjct 293972 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 294031
Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359
|| || || || ||||| || ||
Sbjct 294032 GATACCCTCCTTATCTTGAATCTT 294055
>seq154
Length=370784
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315
|| || |||||||| || | || |||||| |||| || |||||||||||||| | ||
Sbjct 211227 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 211168
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375
| |||||||||||||| ||||| || || || || || || || ||| ||| ||
Sbjct 211167 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 211108
Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435
| || || || || || || | || | |||||| || |||| || || ||||||
Sbjct 211107 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 211048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499638329599840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |