Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq431 336 2e-87
>seq431
Length=114165
Score = 336 bits (372), Expect = 2e-87
Identities = 1085/1668 (65%), Gaps = 32/1668 (2%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | || || | |||||| || |||||| || |||||||||||| | || |||
Sbjct 109080 AACTACCAATATTTCGGCTTCAAGACCTTGGAGAGATCATACCTCCTCAAGCTTGACGGC 109139
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||| |||| || || || | ||||| |||||| | || || || ||
Sbjct 109140 AAGATTGCCGAGAGACCCCAGCACATGATCATGCGTGTCGCCGTTGGTATCTGGGGTGAC 109199
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
||| | | || | | | || ||| | ||| | ||| ||
Sbjct 109200 GACGTTGAGCGCGTCATCGAAACCTACAACCTGATGTCGAGCAAATTCTTCACCCACGCT 109259
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| || || || |||||||| || ||||| | | ||| |||| || || ||||| |
Sbjct 109260 TCTCCCACACTCTTCAACGCTGGTACCCCTCAGGCCCAGCTGTCCTCTTGCTTCCTCGTC 109319
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| ||||| || || || | ||||| ||||||| || || | ||
Sbjct 109320 GAC-ATGAAGGAGGACTCTATTGAGGGTATCTACGACACCCTCAAGACTTGCGCCATGAT 109378
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || || || || || || ||| || || | | ||||||| || |||||
Sbjct 109379 CTCCAAGATGGCCGGTGGCATTGGTCTCAACGTTCATCGCATCCGTGCCACCGGCTCCTA 109438
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
|| ||| || || || ||||| ||||| ||||||| |||||||| |||||||||||
Sbjct 109439 TATTGCCGGCACTAACGGTACCTCGAACGGTGTCGTCCCCATGCTCCGTGTCTTCAACAA 109498
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| | || |||||||| ||||||||||| | | |||| ||||||| |||| ||
Sbjct 109499 CACTGCTCGCTACGTCGACCAGGGTGGCAACAAACGCCCGGGTGCTTTCGCCATCTACCT 109558
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
||||| |||||||| || || | ||| | || ||||| |||||||||||||| ||
Sbjct 109559 TGAGCCTTGGCACGCCGATGTCTTCGACTTCTTGGATCTGCGCAAGAACCACGGCAAGGA 109618
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
|| | ||| | ||||| ||| |||||||||| | || ||||| || ||||| |
Sbjct 109619 GGAGGTTCGTGCCCGTGACCTTTTCCTCGCTCTCTGGATTCCCGACCTCTTCATGAAGAG 109678
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
|| ||||| ||| | ||||| ||| | || ||||| || || || || ||| ||||
Sbjct 109679 GGTAGAGAAGAACGGGGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGCCTGGCCGA 109738
Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433
| | || | || || | |||||| | ||||| | |||||||| |
Sbjct 109739 CTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG 109798
Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493
||| ||| | || |||||| ||| || ||| | || | ||| ||||| ||
Sbjct 109799 CAAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGG 109858
Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553
| || | ||| | | |||||| | | |||| |||| ||||||| || |||| ||
Sbjct 109859 CAACCCTTTCATGCTCTACAAGGATGCCGCCAACCGCAAGAGCAACCAGAAGAACCTTGG 109918
Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613
||| ||||| || || ||||| ||||| ||||||| | || || ||| |
Sbjct 109919 CACCATCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTGCGCGCCTGATGAGGT 109978
Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673
|| || || ||||||| ||| || | || |||| || || || ||||| |
Sbjct 109979 CGCGGTCTGCAACCTGGCCTCGCTCGCCTTGCCCACCTTTGT------TGACTACA--AC 110030
Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG--GTCTTGAAC 94731
| || || | ||| | || |||| | || | ||| || ||| |||
Sbjct 110031 GAGGGCGTC-TACGACTTCCAGAAGCTCCACGAGGTCAC--CCAGGTTGTTGTCCGCAAC 110087
Query 94732 CTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTG 94791
|||||||| | |||||| ||| |||||| || | |||||| ||| ||| ||
Sbjct 110088 CTGAACAGAATCATCGACGTCAACCACTACCCTGTTCAGGAGGCTCGCAACAGCAACATG 110147
Query 94792 AAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGT 94851
|| || ||||| || |||| ||||||||| | || || || | || ||||
Sbjct 110148 CGTCACCGCCCCATTGGTCTCGGTGTCCAGGGTCTTGCTGATGCCTTCCTGGCTCTGCGC 110207
Query 94852 CTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTAT 94911
|||||| ||| ||| || || | | || ||| || || || | ||| ||
Sbjct 110208 ATGCCCTTCGAGTCTCCTGAGGCTCGCGACCTAAACAAGAAGATCTTTGAGACCATCTAC 110267
Query 94912 TACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC-ACGAATC 94970
||| ||| | | || || || |||||| ||| || ||||| | || | |
Sbjct 110268 CACGCTGCCCTCACCATGTCGGTGCAGCTGGCCA---AGGA-GGAGGGCCCCTACCAGAC 110323
Query 94971 GTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCC 95030
|| | || || ||| | |||||||| | |||| |||| | ||| ||| |||||
Sbjct 110324 GTACGAGGGTTCCCCCGTCTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCC 110383
Query 95031 CTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAA 95088
||||| ||| | |||||||| ||| | | | || || | | | ||||||||
Sbjct 110384 CTCGGATCTCTGGGACTGGGACGCTTTGAAGGAGCAGA--TCAAGCAGCACGGTGTCCGC 110441
Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148
||| | || || || || |||||||| || || ||| |||||||| | |||||||||
Sbjct 110442 AACTCTCTTCTCGTCGCGCCCATGCCGACTGCTAGCACCTCGCAGATCTTGGGCAACAAC 110501
Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208
|||| || || |||| |||||||||| | ||| | | || || || || || || |||
Sbjct 110502 GAGTGCTTTGAGCCCTACACCTCCAACATCTACCAGCGACGTGTTCTTGCTGGTGAGTTC 110561
Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGG---GGTGA 95264
| ||| ||||| ||| | ||||| || || | ||||| ||||| | ||
Sbjct 110562 CAGGTCGTCAACCCTTGGCTCTTGAAGGACCTTGTCGAC-ATGGGTTTGTGGTCCGATGC 110620
Query 95265 CAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACC 95324
|| | ||||||| | | || ||||| || ||||||||||||| | || ||
Sbjct 110621 CA---TGAAGAACCGCATCATTGCCGAGAACGGTTCGATCCAGAACATCCCCAACATCCC 110677
Query 95325 GGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
|| ||||||| || |||||||| || ||||| ||| | |||||
Sbjct 110678 TACTGAGGTCAAGGCCCTGTACAAGACTGTTTGGGAAATCTCTCAGCG 110725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494716793334560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |