Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq431 179 4e-40
seq444 125 7e-24
seq456 95.1 1e-14
seq120 82.4 8e-11
>seq431
Length=114165
Score = 179 bits (198), Expect = 4e-40
Identities = 975/1536 (63%), Gaps = 37/1536 (2%)
Strand=Plus/Minus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || ||||| || || | || |||| | || | ||| ||| | |
Sbjct 110574 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 110515
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| |||||| | ||||| ||||| | || || | ||| | || ||||||||| ||| |
Sbjct 110514 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 110455
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206
| | | ||| || || | |||||| ||| || | | |||||||| || | ||| |||
Sbjct 110454 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAAAGCGTCCCAGTCC 110396
Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266
|| || |||| || | | ||||||||||||||||| | | || || | ||||
Sbjct 110395 CAGAGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGG 110336
Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCT--CGA 153324
|| | |||| |||| ||| || | |||||| | ||| | | | | ||
Sbjct 110335 GAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGA-CATGGTGA 110278
Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384
| || | | ||| ||||| || ||| | || || || || || || ||
Sbjct 110277 GGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACT 110218
Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444
|| | ||||||||||| || ||||| || || |||||||||| ||||| || ||||
Sbjct 110217 CGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGG 110158
Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502
| || || | ||||||| | || ||| || | || ||||| ||| |||||
Sbjct 110157 GGCGGTGACGCATGTTGCTGTTGCGAGC-CTC-CTGAACAGGGTAGTGGTTGACGTCGAT 110100
Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562
||| |||| |||||||| || || || | || | | | | || |||| ||| || ||
Sbjct 110099 GATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 110040
Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622
| |||| | | || | || ||| | || ||||| || ||||| ||
Sbjct 110039 GACGCCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGC 109980
Query 153623 CGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681
||| || |||| ||| ||||| | |||||| | |||||||||| || |||
Sbjct 109979 GACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGG 109921
Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741
||| | || | ||| ||||| ||||| ||| || || ||| |||||||| | ||
Sbjct 109920 TGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGT 109861
Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798
||| |||||| || | |||| ||| | ||| || | ||| || ||
Sbjct 109860 TGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC---AGAGCTTCTGGGCCTTCATGG 109804
Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858
|| ||| |||| |||||| |||||||| ||| ||||| |||||||
Sbjct 109803 TCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGT 109744
Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGT 153918
|||||||||| ||||| || |||| | || ||||| || | ||| ||| |
Sbjct 109743 AGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCT 109684
Query 153919 TGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGC 153978
|| | |||||| || || || | |||||| ||| | ||||| || ||
Sbjct 109683 CTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAA 109624
Query 153979 AATCCTCCGCGCC---CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCC 154035
|||||| ||| | ||||| ||||| | | | ||| ||||||||||
Sbjct 109623 CCTCCTCCTTGCCGTGGTTCTTGCG---CAGATCCAAGAAGTCGAAGACATCGGCGTGCC 109567
Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACG---CTTTCCGCCCTGATCGACGTGGC 154092
| || |||| ||||| ||| | ||||| || || || ||||| ||||||| ||
Sbjct 109566 AAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGC 109507
Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCG 154152
| | | ||||||||||| || | |||||| | | ||| | | ||| ||||| ||
Sbjct 109506 GAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGC 109447
Query 154153 AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGT 154212
|| | | |||| ||| || | |||| ||||| | |||||||| ||| |
Sbjct 109446 CGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCA 109387
Query 154213 ACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCG 154271
||| || || |||| |||| || || |||||| || || || || ||
Sbjct 109386 TCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCC 109328
Query 154272 CGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCCCGCCGAAAAGAG 154330
| | ||| | ||| || || ||| || || || | || || || |||||
Sbjct 109327 TTCATGTCGACGAGGAAGCAAGAGGACAGCTG-GGCCTGAGGGGTACCAGCGTTGAAGAG 109269
Query 154331 GGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT---CATCATGCGGTACGTTTCGATGGC 154387
|||||| ||||| || || | ||| ||| ||||| | ||| ||||||||| |
Sbjct 109268 TGTGGGAGAAGCGTGGGTGAAGAATTT---GCTCGACATCAGGTTGTAGGTTTCGATGAC 109212
Query 154388 GTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACG 154447
| || | || || || || || | ||||| ||||||| ||||||||| || |
Sbjct 109211 GCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCT 109152
Query 154448 TTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAA 154507
||||| | | ||||| ||| | ||| ||| | || | ||| ||| | |||||
Sbjct 109151 CTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAA 109092
Query 154508 ATACTTGTATTCAAAATCTAGCTCATGAGCGATGGC 154543
||| | ||| | || || | |||| |||||||
Sbjct 109091 ATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 109056
>seq444
Length=118335
Score = 125 bits (138), Expect = 7e-24
Identities = 347/525 (66%), Gaps = 29/525 (6%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGC 52384
|| || ||| | ||||| ||||| | ||||| ||||||||||| | || ||| | |
Sbjct 61007 GTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGA-CGAGAAGTC 61065
Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444
| | | ||| ||||| | || ||||||||| |||||||| | || || |||
Sbjct 61066 CTCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGC 61125
Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
||| ||| ||||||| | | || | | || | ||||| || ||||| ||| |||
Sbjct 61126 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAA 61185
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---- 52557
|||| | || || || || || || || ||||| |||||||| || ||||||||
Sbjct 61186 CGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCA 61245
Query 52558 --ACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615
||||| ||| | | | | | | ||||| || ||| ||
Sbjct 61246 CCTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATTAT--------TGT----CGA 61293
Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675
|| || ||||| ||||||| | || | || ||||| || ||||| |||||
Sbjct 61294 TGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCAT 61353
Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735
|||| | | ||| ||||||| ||||| || || || ||||| ||||| |||
Sbjct 61354 GAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGT--TGCT 61411
Query 52736 C-GGGCA--GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792
| |||| | ||| || || ||| || ||||||||| || |||||| | ||||| ||
Sbjct 61412 CTTGGCAATGACAAGGT-CTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTC 61470
Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | |||||||||||||| || |||||||| || | ||| ||
Sbjct 61471 TCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 61515
>seq456
Length=89672
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || ||||||||| || || || |
Sbjct 20922 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCG 20863
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 20862 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 20803
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
|||| | | |||||||| ||||||||||| | || | || ||||| || || || ||
Sbjct 20802 TTGT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTT 20744
Query 138600 TACAAAAATCTGCATG 138615
|| || |||||||||
Sbjct 20743 GACGAAGATCTGCATG 20728
>seq120
Length=409222
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| |||| || || ||||| | || || || |
Sbjct 293718 GACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCG 293777
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || |||||||| || || ||||| ||||| || ||||| ||| | || | || |
Sbjct 293778 AAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTC-CTGAATCTTCGACTTGAC 293836
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||| | ||||| ||||| | || | ||| || || |||| ||| |
Sbjct 293837 GTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCT 293895
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 293896 TGACGAAGATCTGCAT 293911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496255973401920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |