Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq431 179 4e-40 seq444 125 7e-24 seq456 95.1 1e-14 seq120 82.4 8e-11 >seq431 Length=114165 Score = 179 bits (198), Expect = 4e-40 Identities = 975/1536 (63%), Gaps = 37/1536 (2%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||| || || | || |||| | || | ||| ||| | | Sbjct 110574 GGTTGACGACCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGG 110515 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | ||||| ||||| | || || | ||| | || ||||||||| ||| | Sbjct 110514 GCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGA 110455 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | | | ||| || || | |||||| ||| || | | |||||||| || | ||| ||| Sbjct 110454 CGAGAAGAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAAAGCGTCCCAGTCC 110396 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || |||| || | | ||||||||||||||||| | | || || | |||| Sbjct 110395 CAGAGATCCGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGG 110336 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCT--CGA 153324 || | |||| |||| ||| || | |||||| | ||| | | | | || Sbjct 110335 GAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGCT-GCACCGA-CATGGTGA 110278 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | || | | ||| ||||| || ||| | || || || || || || || Sbjct 110277 GGGCAGCGTGGTAGATGGTCTCAAAGATCTTCTTGTTTAGGTCGCGAGCCTCAGGAGACT 110218 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 || | ||||||||||| || ||||| || || |||||||||| ||||| || |||| Sbjct 110217 CGAAGGGCATGCGCAGAGCCAGGAAGGCATCAGCAAGACCCTGGACACCGAGACCAATGG 110158 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502 | || || | ||||||| | || ||| || | || ||||| ||| ||||| Sbjct 110157 GGCGGTGACGCATGTTGCTGTTGCGAGC-CTC-CTGAACAGGGTAGTGGTTGACGTCGAT 110100 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 ||| |||| |||||||| || || || | || | | | | || |||| ||| || || Sbjct 110099 GATTCTGTTCAGGTTGCGGACAACAACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 110040 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | |||| | | || | || ||| | || ||||| || ||||| || Sbjct 110039 GACGCCCTCGTTGTAGTCAACAAAGGTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGC 109980 Query 153623 CGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 ||| || |||| ||| ||||| | |||||| | |||||||||| || ||| Sbjct 109979 GACCTCATCAGGCG-CGCAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGG 109921 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 ||| | || | ||| ||||| ||||| ||| || || ||| |||||||| | || Sbjct 109920 TGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGT 109861 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 ||| |||||| || | |||| ||| | ||| || | ||| || || Sbjct 109860 TGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACC---AGAGCTTCTGGGCCTTCATGG 109804 Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858 || ||| |||| |||||| |||||||| ||| ||||| ||||||| Sbjct 109803 TCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGT 109744 Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGT 153918 |||||||||| ||||| || |||| | || ||||| || | ||| ||| | Sbjct 109743 AGCAGTCGGCCAGGCCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCT 109684 Query 153919 TGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGC 153978 || | |||||| || || || | |||||| ||| | ||||| || || Sbjct 109683 CTACCCTCTTCATGAAGAGGTCGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAA 109624 Query 153979 AATCCTCCGCGCC---CATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCC 154035 |||||| ||| | ||||| ||||| | | | ||| |||||||||| Sbjct 109623 CCTCCTCCTTGCCGTGGTTCTTGCG---CAGATCCAAGAAGTCGAAGACATCGGCGTGCC 109567 Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACG---CTTTCCGCCCTGATCGACGTGGC 154092 | || |||| ||||| ||| | ||||| || || || ||||| ||||||| || Sbjct 109566 AAGGCTCAAGGTAGATGGCGAAAGCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGC 109507 Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCG 154152 | | | ||||||||||| || | |||||| | | ||| | | ||| ||||| || Sbjct 109506 GAGCAGTGTTGTTGAAGACACGGAGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGC 109447 Query 154153 AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGT 154212 || | | |||| ||| || | |||| ||||| | |||||||| ||| | Sbjct 109446 CGGCAATATAGGAGCCGGTGGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCA 109387 Query 154213 ACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCG 154271 ||| || || |||| |||| || || |||||| || || || || || Sbjct 109386 TCTTGGAGATCATGGCGCAAGTC-TTGAGGGTGTCGTAGATACCCTCAATAGAGTCCTCC 109328 Query 154272 CGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCCCGCCGAAAAGAG 154330 | | ||| | ||| || || ||| || || || | || || || ||||| Sbjct 109327 TTCATGTCGACGAGGAAGCAAGAGGACAGCTG-GGCCTGAGGGGTACCAGCGTTGAAGAG 109269 Query 154331 GGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT---CATCATGCGGTACGTTTCGATGGC 154387 |||||| ||||| || || | ||| ||| ||||| | ||| ||||||||| | Sbjct 109268 TGTGGGAGAAGCGTGGGTGAAGAATTT---GCTCGACATCAGGTTGTAGGTTTCGATGAC 109212 Query 154388 GTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACG 154447 | || | || || || || || | ||||| ||||||| ||||||||| || | Sbjct 109211 GCGCTCAACGTCGTCACCCCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCT 109152 Query 154448 TTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAA 154507 ||||| | | ||||| ||| | ||| ||| | || | ||| ||| | ||||| Sbjct 109151 CTCGGCAATCTTGCCGTCAAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAA 109092 Query 154508 ATACTTGTATTCAAAATCTAGCTCATGAGCGATGGC 154543 ||| | ||| | || || | |||| ||||||| Sbjct 109091 ATATTGGTAGTTGAAGTCGCGGTCATAGACGATGGC 109056 >seq444 Length=118335 Score = 125 bits (138), Expect = 7e-24 Identities = 347/525 (66%), Gaps = 29/525 (6%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGC 52384 || || ||| | ||||| ||||| | ||||| ||||||||||| | || ||| | | Sbjct 61007 GTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGA-CGAGAAGTC 61065 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 | | | ||| ||||| | || ||||||||| |||||||| | || || ||| Sbjct 61066 CTCCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGC 61125 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| ||| ||||||| | | || | | || | ||||| || ||||| ||| ||| Sbjct 61126 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAA 61185 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTG---CCTCTACT---- 52557 |||| | || || || || || || || ||||| |||||||| || |||||||| Sbjct 61186 CGAGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCA 61245 Query 52558 --ACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615 ||||| ||| | | | | | | ||||| || ||| || Sbjct 61246 CCTCAAGAACCGCCCCAGCAAGCAGGTCATTGAGGACATTAT--------TGT----CGA 61293 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 || || ||||| ||||||| | || | || ||||| || ||||| ||||| Sbjct 61294 TGCTGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCAT 61353 Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 |||| | | ||| ||||||| ||||| || || || ||||| ||||| ||| Sbjct 61354 GAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGT--TGCT 61411 Query 52736 C-GGGCA--GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 | |||| | ||| || || ||| || ||||||||| || |||||| | ||||| || Sbjct 61412 CTTGGCAATGACAAGGT-CTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTC 61470 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | |||||||||||||| || |||||||| || | ||| || Sbjct 61471 TCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 61515 >seq456 Length=89672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || || | Sbjct 20922 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCG 20863 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 20862 AAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 20803 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| ||||||||||| | || | || ||||| || || || || Sbjct 20802 TTGT-CGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTT 20744 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 20743 GACGAAGATCTGCATG 20728 >seq120 Length=409222 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| |||| || || ||||| | || || || | Sbjct 293718 GACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCCAGCG 293777 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || |||||||| || || ||||| ||||| || ||||| ||| | || | || | Sbjct 293778 AAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTC-CTGAATCTTCGACTTGAC 293836 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||||| ||||| | || | ||| || || |||| ||| | Sbjct 293837 GTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAGTCT 293895 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 293896 TGACGAAGATCTGCAT 293911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255973401920