Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq456 118 1e-21
seq120 118 1e-21
seq444 116 4e-21
seq154 91.5 1e-13
>seq456
Length=89672
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | |||||||| || || || ||||| |||
Sbjct 20955 CCACCACGGAGGCGCAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 20896
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||||||| |||||| |||||||| || || ||
Sbjct 20895 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 20836
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | | ||| ||
Sbjct 20835 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 20776
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || || || || || || || || || |||||||||
Sbjct 20775 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 20728
>seq120
Length=409222
Score = 118 bits (130), Expect = 1e-21
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || || ||||| || | || ||||| ||| || | ||| || ||
Sbjct 293714 CGTCGACTCCTTCTGGATGTTGTAGTCACTCAAGGTGCGGCCATCCTCCAACTGCTTGCC 293773
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
|||| | || | ||||||||||||||||| || |||||||||||| || ||| |||
Sbjct 293774 AGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTT 293833
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
|| |||| || | ||||||| | |||||| || | || | ||| || ||||||| ||
Sbjct 293834 GACGTTG-TCAATCGTGTCCGAAGACTCGACCTCTAGTGTGATCGTCTTTCCGGTCAAAG 293892
Query 127095 TTTTTACAAAAATCTGCAT 127113
| || || || ||||||||
Sbjct 293893 TCTTGACGAAGATCTGCAT 293911
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||||| || | |||||||| || || || ||||| ||| |
Sbjct 294141 CCACCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 294200
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| ||||||| |||||||| ||||| ||
Sbjct 294201 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 294260
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||| | |||| |||| ||| || | ||||||
Sbjct 294261 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTG-TCGATGGTATCGGAGGACTCGAC 294319
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | ||| | || |||||||| || || || ||
Sbjct 294320 CTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGAC 294355
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | |||||||| || || || ||||| ||| |
Sbjct 294425 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 294484
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| ||||||| |||||||| ||||| ||
Sbjct 294485 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGA 294544
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||| | |||| |||| ||| || | ||||||
Sbjct 294545 ATGCCCTCCTTGTCCTGAATCTTAGACTTCACGTTG-TCGATGGTATCGGAGGACTCGAC 294603
Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089
|| | ||| | || ||||||||
Sbjct 294604 CTCAAGGGTAATGGTCTTGCCGGT 294627
>seq444
Length=118335
Score = 116 bits (128), Expect = 4e-21
Identities = 339/517 (66%), Gaps = 19/517 (4%)
Strand=Plus/Plus
Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129
|||||| | |||| |||||||| ||||| |||||| || |||| || ||| ||
Sbjct 61010 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCAGCGACGAGAA-GTC-CT 61067
Query 47130 C--TGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCT 47187
| | ||| | || | | || |||||| ||||||||| |||||||| || ||
Sbjct 61068 CCTTCGCCCAGCGCCTCGTTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCT 61127
Query 47188 TTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACG 47247
| || | || || | | || | || ||||||| || || || || |||||
Sbjct 61128 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCTGGTCTGACCTTCTCCAACG 61187
Query 47248 AGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTAC----AAC 47303
|||| ||||| | || || || || |||||| |||||||||| ||| |||| | |
Sbjct 61188 AGCTCATCTCTCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTACTCTCACC 61247
Query 47304 ACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCG 47361
| ||| || | | ||| || | | | || ||||| ||| ||| || |
Sbjct 61248 TCAAGAACCGCCCCAGCAAGCAGGTCAT--------TGAG-GACATTATTGTCGATGCTG 61298
Query 47362 TCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACG 47421
|| || ||| |||||| | ||||||||||||| || | | || ||||||
Sbjct 61299 TCAAGATCGAGCAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACT 61358
Query 47422 CGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGT 47481
| | |||||| ||||||| || || ||||| ||||| || | ||| ||
Sbjct 61359 CCAACCTGATGAAGCAGTACATTGAGTTCGTCGCTGACCGTCTCTTGGTTGCTCTTGGCA 61418
Query 47482 ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541
|| |||| | ||| | | ||||| ||||| |||||| | ||||| || || | |
Sbjct 61419 ATGACAAGGTCTACAAGTCTTCCAATCCGTTCGACTTTATGGAGAACATCTCTCTGGGCG 61478
Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
||||||||||||| || |||||||| || | ||| ||
Sbjct 61479 GCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGACTA 61515
>seq154
Length=370784
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| || || ||||| || || ||| |||||
Sbjct 211227 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 211168
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| ||||| || ||||||||||||||| ||| || ||||| | |||
Sbjct 211167 AAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 211108
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||||| |||||| || | ||| | || || || ||||| || || || |||
Sbjct 211107 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 211048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475494642264640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |