Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq120 98.7 9e-16 seq431 82.4 7e-11 >seq120 Length=409222 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | | || |||||||| || |||||||| || || || || ||| Sbjct 293910 ATACCTCCGCGGAGGCGAAGGACGAGATGCAGAGTAGATTCCTTCTGAATGTTGTAGTCG 293969 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | ||||| || |||||||| || Sbjct 293970 GACAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGG 294029 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || ||||||||||| || |||| || | || | |||||| || || || Sbjct 294030 GGGATACCCTCCTTATCTTGAATCTTCGACTTGA-CGTTGTCGATGGTGTCTGACGATTC 294088 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || |||| || ||||| || || || || || || || ||||| Sbjct 294089 GACCTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 294139 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | || || || ||||| || ||||| ||||| || || || || Sbjct 293685 CCTCCACGCAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCACTC 293744 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||| || || || ||| | || | || ||||| || || ||| Sbjct 293745 AAGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGAGGA 293804 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || ||||| || |||| || | || | ||||| ||||||||||| Sbjct 293805 ATACCCTCCTTGTCCTGAATCTTCGACTTGA-CGTTGTCAATCGTGTCCGAAGACTCGAC 293863 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || ||||| | ||| || || || || ||||| Sbjct 293864 CTCTAGTGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 293911 >seq431 Length=114165 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 124107 CAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAA 124166 ||||||||||||||||||| | || | || | ||||||||| || ||| || | Sbjct 110358 CAGTACGACATGTGGAATGTCAAGCCCTCGGATCTCTGGGACTGGGACGCTTTGAAGGA- 110416 Query 124167 CGCATATC--GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAA 124224 ||| ||| | ||||||| | || ||||| || | || ||| ||||||||| || | Sbjct 110417 -GCAGATCAAGCAGCACGGTGTCCGCAACTCTCTTCTCGTCGCGCCCATGCCGACTGCTA 110475 Query 124225 CCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACG 124284 ||| | || || || || |||||||| | ||| ||||| | ||| ||| | ||| Sbjct 110476 GCACCTCGCAGATCTTGGGCAACAACGAGTGCTTTGAGCCCTACACCTCCAACATCTACC 110535 Query 124285 TGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 |||||| || | || || || || || || Sbjct 110536 AGCGACGTGTTCTTGCTGGTGAGTTCCAGGT 110566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451997346558560