Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq431 239 6e-58
seq444 109 7e-19
>seq431
Length=114165
Score = 239 bits (264), Expect = 6e-58
Identities = 1059/1655 (64%), Gaps = 55/1655 (3%)
Strand=Plus/Minus
Query 115719 GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 115778
||||||||| ||||| |||| ||| ||| | ||| ||||| | ||| || ||
Sbjct 110717 GATTTCCCAAACAGTCTTGTACAGGGCCTTGACCTCAGTAGGGATGTTGGGGATGTTCTG 110658
Query 115779 GATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAAT 115835
||| || ||| || | | |||| | | |||||| | | ||||| | ||| ||
Sbjct 110657 GATCGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCGGACCACAAACCCAT 110601
Query 115836 CTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 115895
| || |||| || ||| ||||| || |||||||| || || ||
Sbjct 110600 GTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGACCTGGAACTCACCAGCAAGAACACG 110541
Query 115896 TCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 115955
|| | | |||||||||| ||||| |||||||||||||| ||||| |||||||| || |
Sbjct 110540 TCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAAGATCTGCGA 110481
Query 115956 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAAT 116015
||| || || |||||||| || | |||||| |||||||| ||| | | | ||
Sbjct 110480 GGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAGAGTTGCGGACACCGTGCTGCTTGAT 110421
Query 116016 GCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAA 116075
| ||||| | ||||||||||| || | | || | | |||||| || |
Sbjct 110420 CTGCTCCTTCAAAGCGTCCCAGTCCCAGAGATCCGAGGGCTTGACATTCCACATGTCGTA 110361
Query 116076 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 116135
||||||||| || || || | || || ||||| | |||| || |||||||| |||
Sbjct 110360 CTGGAGGATGCCCTGAGAGACGGGGGAACCCTCGTACGTCTGGTAGGGGCCCTCCTCCTT 110301
Query 116136 CGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 116192
|||| | | || | | |||||| ||||| || || |||||||| ||
Sbjct 110300 GGCCAGCTGCACCGACATGG---TGAGGGCAGCGTGGTAGATGGTCTCAAAGAT------ 110250
Query 116193 ATTCATTGCCTTGGCCTCG-TCGGAATCAAACGCGAGACGGCA----CAAA---ATAAAT 116244
||| ||| | || | || | | | || ||| | |||| || | | ||
Sbjct 110249 CTTC-TTGTTTAGGTCGCGAGCCTCAGGAGACTCGA-AGGGCATGCGCAGAGCCAGGAAG 110192
Query 116245 ACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGA 116304
|||| || ||||| ||||||||||| ||||| ||||| || | ||| || || |||
Sbjct 110191 GCATCAGCAAGACCCTGGACACCGAGACCAATGGGGCGGTGACGCATGTTGCTGTTGCGA 110132
Query 116305 GCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 116364
|| || || || || || ||||| | || || || || | ||||||
Sbjct 110131 GCCTCCTGAACAGGGTAGTGGTTGACGTCGATGATTCTGTTCAGGTTGCGGACAACAACC 110072
Query 116365 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---ACATAC 116421
| |||| || || ||||| | | | || | || ||| | | | ||| |
Sbjct 110071 TGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACGC---CCTCGTTGTAGTCAACAAAG 110015
Query 116422 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 116481
| || | ||||| || ||||| || || || | | |||||| | ||||||
Sbjct 110014 GTGGGCAAGGCGAGCGAGGCCAGGTTGCAGACCGCGACCTCATCAGGCGCGCAGTACTCG 109955
Query 116482 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 116541
|| || ||||| || | || || || |||||||| | |||||| || || |||
Sbjct 109954 ATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCAAGGTTCTTCTGGTTGCTCTTG 109895
Query 116542 GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 116601
||| ||||||||||||||||| | || | || ||||| || |||| || |||
Sbjct 109894 CGGTTGGCGGCATCCTTGTAGAGCATGAAAGGGTTGCCAGTCTCGGTCTGGGCCTCGAGG 109835
Query 116602 ATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTG----GCTCGCCCCTCCTCCT 116656
|| || | ||| | | || | ||| || ||| ||| || |||| | || ||
Sbjct 109834 ATGGCATACCAGAGCTTCTG-GGCCTTCA---TGGTCTTGCGACCCTTGCCCAT-CTGCT 109780
Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCC 116715
||||||| ||| | |||||| ||||| || || ||| || | || || || |
Sbjct 109779 CGTACTTCTCGTACAAGGCCTCGAACTCCTC-GCCGTAGCAGTCGGCCAGGCCAGGGCAC 109721
Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775
| | || || | ||||| ||| | || || ||| |||| |||||||||||||||
Sbjct 109720 TCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCTACCCTCTTCATGAAGAGGTCG 109661
Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835
|| |||||||| || ||| || || || ||| | || || | || || ||
Sbjct 109660 GGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTG 109601
Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 116895
|||| ||||| ||||| | || ||| |||||||| || || ||||| | |||| |
Sbjct 109600 CGCAGATCCAAGAAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAAGCA 109541
Query 116896 CCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGC 116952
||| ||| ||| |||||| || || | || || ||| || || || |||
Sbjct 109540 CCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGGAGC 109481
Query 116953 ATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTG 117012
|| || | || ||| | || || || || || |||| || | |||| | |
Sbjct 109480 ATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCCGGTGGCACGG 109421
Query 117013 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTG 117072
| || | || | |||||| || || ||| ||| ||||| ||||| | ||
Sbjct 109420 ATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAAGTCTTG 109361
Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 117132
|| || ||||||| || || || ||||| |||| | ||| ||||||||| |||
Sbjct 109360 AGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCATGTCGACGAGGAAGCAAGAGGAC 109301
Query 117133 ATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA--TA 117189
| || ||||| || ||||||||||||||||| || || | |||||| |||| | |
Sbjct 109300 AGCTG-GGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTGAAGAATTT 109242
Query 117190 CCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCG 117249
|| |||||| | |||||| || | ||| || ||| || || |||||
Sbjct 109241 GCT--CGACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACCCCAGATACCA 109184
Query 117250 ATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGG 117309
| | ||| ||||| | ||||| |||||| | || | | || || ||| | ||
Sbjct 109183 ACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTCAAGCTTGAGG 109124
Query 117310 AGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344
||||| ||||||||||||||| || |||||
Sbjct 109123 AGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATA 109089
>seq444
Length=118335
Score = 109 bits (120), Expect = 7e-19
Identities = 161/227 (71%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || |||||||||||| ||||| |||||||| || || |||||| ||||||
Sbjct 61227 GCAAAGTCGGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 61168
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||| ||||| |||||||| | |||||| || | || | || |||||||||
Sbjct 61167 GGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATA 61108
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696
||||| || ||||| |||| || |||| ||| ||||| |||||| ||
Sbjct 61107 CCCTCGACGGCGGCGAAGGCAACGAGGCGCTGGGCGAAGGA---GGACTTCTCGTCGCTG 61051
Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743
| |||||||| ||||| | ||||| || ||| || || || ||
Sbjct 61050 ATCCACTTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGAACTGT 61004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613499255081760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |