Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq431 176 7e-39
>seq431
Length=114165
Score = 176 bits (194), Expect = 7e-39
Identities = 460/683 (67%), Gaps = 18/683 (3%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896
|| ||| || ||||||||||||| | || | |||| ||||| | | ||| |||||||||
Sbjct 110921 CTGGTCGACTGTGAACTGAATGG-GCGCAGCAGCAG-CCTGCGTGCGCAGGTAGTACATG 110864
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| || || || ||| ||| | ||||||| | | ||||| || | |
Sbjct 110863 CCCGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTC 110804
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015
||||| |||||||||||| || ||||| ||||| ||||| ||| || || || ||
Sbjct 110803 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAA-GGCACCACGGTCGGC 110745
Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075
||||| | | | ||| ||| || || ||||| || |||||| ||| | | ||
Sbjct 110744 AGCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGGGCCTTGAC 110685
Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134
| ||| | | | | || ||| ||||| ||||| ||||| || | | ||
Sbjct 110684 CTCAGTAGGGATGT-TGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCT 110626
Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194
|| | | || ||||| |||| || || ||| || || ||||||| ||
Sbjct 110625 TCATGGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGA 110566
Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254
||| || || || | || || | ||| | | | |||| |||| | || || ||
Sbjct 110565 CCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGC 110506
Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314
|||||||||||| || ||||| | |||||| || || |||||||| || | ||| || |
Sbjct 110505 ACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAG 110446
Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTC---GTGCATC 204370
||||||| ||||||| | | || |||| ||||| || | |||||| | | |||
Sbjct 110445 AGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAAAGCGTCCCAGTCCCAGAG-ATC 110388
Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430
| ||| || || |||||||||| |||| | |||||| ||| ||| ||| |||
Sbjct 110387 CGA--GGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCC 110330
Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTG 204489
| ||||||| | || || ||||| | |||||| |||| ||| || | |||
Sbjct 110329 TCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGC-TGCACCGACATGGTGAGGGCAGC 110271
Query 204490 ATAGTACATGGTCTCAAAGATCT 204512
| ||| ||||||||||||||||
Sbjct 110270 GTGGTAGATGGTCTCAAAGATCT 110248
Score = 113 bits (124), Expect = 7e-20
Identities = 476/738 (64%), Gaps = 24/738 (3%)
Strand=Plus/Minus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
|||||| || ||||| ||| | || || ||||| ||| ||| || || ||
Sbjct 109781 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 109722
Query 205120 TTTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGT 205178
| ||||| ||||| |||| ||| | | || ||| | ||||||| ||| || ||||
Sbjct 109721 CTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCT-ACCCTCTTCATGAAGAGGT 109663
Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238
|| ||||| || || || || |||||||| | || | || | || ||||||
Sbjct 109662 CGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCT 109603
Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297
| || |||| ||| || | | ||||||||||| ||||| | | | ||| |
Sbjct 109602 TGCGCAGATCCAAG-AAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAA 109544
Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357
|| || || | ||||| ||||||||||| || ||||| | |||||| || ||
Sbjct 109543 GCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGG 109484
Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417
||||| || || | |||||| | ||| ||||| |||| | || ||||| |
Sbjct 109483 AGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCC----GGT 109428
Query 205418 CTCACGTTGGAGATGGCCG----CGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC- 205472
|||| | |||| || ||||| || || | ||||| |||| |||||
Sbjct 109427 GGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 109368
Query 205473 ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAG 205531
| ||||| || ||| |||||| || | || || || ||| || |||| || || ||
Sbjct 109367 AGTCTTG-AGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCA-TGTCGACGAGGAAG 109310
Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591
|| || | ||||| ||| ||| || |||| |||||| ||||| |||||| ||
Sbjct 109309 CAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTG 109250
Query 205592 AAGCGCTTCTCGCTCAAACACC----TGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCC 205647
||| || |||| ||| | ||||||| || | |||| ||| | ||| ||
Sbjct 109249 AAGAATTT---GCTC-GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACC 109194
Query 205648 GTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTT 205707
||||| | ||||| | ||||| | ||| || |||||||| | | | |||
Sbjct 109193 CCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTC 109134
Query 205708 CACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTC 205767
| |||||| || || | |||||| | ||| || | | ||| | | | || || ||||
Sbjct 109133 AAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTC 109074
Query 205768 CCTAGAATAGTCGATGGC 205785
| |||| |||||||
Sbjct 109073 GCGGTCATAGACGATGGC 109056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795144902740160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |