Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq431 176 7e-39 >seq431 Length=114165 Score = 176 bits (194), Expect = 7e-39 Identities = 460/683 (67%), Gaps = 18/683 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || ||||||||||||| | || | |||| ||||| | | ||| ||||||||| Sbjct 110921 CTGGTCGACTGTGAACTGAATGG-GCGCAGCAGCAG-CCTGCGTGCGCAGGTAGTACATG 110864 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || || ||| ||| | ||||||| | | ||||| || | | Sbjct 110863 CCCGTCTTCAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATTTTGCCCATGGTC 110804 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 ||||| |||||||||||| || ||||| ||||| ||||| ||| || || || || Sbjct 110803 GGGTCCTTCATGTGAATGTTGAGCGACTGCGACTGGTCAATGAA-GGCACCACGGTCGGC 110745 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 ||||| | | | ||| ||| || || ||||| || |||||| ||| | | || Sbjct 110744 AGCCATCTGCACGACGGTACGCTGAGAGATTTCCCAAACAGTCTTGTACAGGGCCTTGAC 110685 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | ||| | | | | || ||| ||||| ||||| ||||| || | | || Sbjct 110684 CTCAGTAGGGATGT-TGGGGATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCT 110626 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | || ||||| |||| || || ||| || || ||||||| || Sbjct 110625 TCATGGCATCGGACCACAAACCCATGTCGACAAGGTCCTTCAAGAGCCAAGGGTTGACGA 110566 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || || | || || | ||| | | | |||| |||| | || || || Sbjct 110565 CCTGGAACTCACCAGCAAGAACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCAAAGC 110506 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||| || ||||| | |||||| || || |||||||| || | ||| || | Sbjct 110505 ACTCGTTGTTGCCCAAGATCTGCGAGGTGCTAGCAGTCGGCATGGGCGCGACGAGAAGAG 110446 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTC---GTGCATC 204370 ||||||| ||||||| | | || |||| ||||| || | |||||| | | ||| Sbjct 110445 AGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAAAGCGTCCCAGTCCCAGAG-ATC 110388 Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 | ||| || || |||||||||| |||| | |||||| ||| ||| ||| ||| Sbjct 110387 CGA--GGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAGACGGGGGAACCC 110330 Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTG 204489 | ||||||| | || || ||||| | |||||| |||| ||| || | ||| Sbjct 110329 TCGTACGTCTGGTAGGGGCCCTCCTCCTTGGCCAGC-TGCACCGACATGGTGAGGGCAGC 110271 Query 204490 ATAGTACATGGTCTCAAAGATCT 204512 | ||| |||||||||||||||| Sbjct 110270 GTGGTAGATGGTCTCAAAGATCT 110248 Score = 113 bits (124), Expect = 7e-20 Identities = 476/738 (64%), Gaps = 24/738 (3%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| || ||||| ||| | || || ||||| ||| ||| || || || Sbjct 109781 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCAGGGCA 109722 Query 205120 TTTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | ||||| ||||| |||| ||| | | || ||| | ||||||| ||| || |||| Sbjct 109721 CTCGTTGGGGCACATGAGAGTCCAGTCCCCGTTCTTCTCT-ACCCTCTTCATGAAGAGGT 109663 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || ||||| || || || || |||||||| | || | || | || |||||| Sbjct 109662 CGGGAATCCAGAGAGCGAGGAAAAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCT 109603 Query 205239 TTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATT 205297 | || |||| ||| || | | ||||||||||| ||||| | | | ||| | Sbjct 109602 TGCGCAGATCCAAG-AAGTCGAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAA 109544 Query 205298 GCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGC 205357 || || || | ||||| ||||||||||| || ||||| | |||||| || || Sbjct 109543 GCACCCGGGCGTTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGG 109484 Query 205358 AGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCC 205417 ||||| || || | |||||| | ||| ||||| |||| | || ||||| | Sbjct 109483 AGCATGGGGACGACACCGTTCGAGGTACCGTTAGTGCCGGCAATATAGGAGCC----GGT 109428 Query 205418 CTCACGTTGGAGATGGCCG----CGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC- 205472 |||| | |||| || ||||| || || | ||||| |||| ||||| Sbjct 109427 GGCACGGATGCGATGAACGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCA 109368 Query 205473 ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAG 205531 | ||||| || ||| |||||| || | || || || ||| || |||| || || || Sbjct 109367 AGTCTTG-AGGGTGTCGTAGATACCCTCAATAGAGTCCTCCTTCA-TGTCGACGAGGAAG 109310 Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 || || | ||||| ||| ||| || |||| |||||| ||||| |||||| || Sbjct 109309 CAAGAGGACAGCTGGGCCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAAGCGTGGGTG 109250 Query 205592 AAGCGCTTCTCGCTCAAACACC----TGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCC 205647 ||| || |||| ||| | ||||||| || | |||| ||| | ||| || Sbjct 109249 AAGAATTT---GCTC-GACATCAGGTTGTAGGTTTCGATGACGCGCTCAACGTCGTCACC 109194 Query 205648 GTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTT 205707 ||||| | ||||| | ||||| | ||| || |||||||| | | | ||| Sbjct 109193 CCAGATACCAACGGCGACACGCATGATCATGTGCTGGGGTCTCTCGGCAATCTTGCCGTC 109134 Query 205708 CACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTC 205767 | |||||| || || | |||||| | ||| || | | ||| | | | || || |||| Sbjct 109133 AAGCTTGAGGAGGTATGATCTCTCCAAGGTCTTGAAGCCGAAATATTGGTAGTTGAAGTC 109074 Query 205768 CCTAGAATAGTCGATGGC 205785 | |||| ||||||| Sbjct 109073 GCGGTCATAGACGATGGC 109056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144902740160